RNA id: TU106330


Basic Information

Item Value
RNA id TU106330
length 1868
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G85202
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14456628 ~ 14495849 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatttaataTTCACCTTCACATTCCTCCCTTATAGGTGGGGGGTAGAGTGAGAAAACCCAAATATAGGCACTTACATAAGCTGCAAACTGTGGCACACAGAAAACAGGCCTGGCTGCATTCTTACTGGCAGTTTCGAAGGAAGGACAGGGTTTTCATTGTAACCTTGCCTGAGCTGCTTCTCTCAGCCCCACTCATTTTCACTTCACTCAAGACAGGCATAACACAACCACTAACTGATTTAAAGCCATCTTTGGCACTACAATTTAAAGCTACAAACAAGTCTAACCTCTCCTAACTTTAACACCCTTTTAGGTTGTAGATTTTCATGTGATGTGTGTTTTTGGAAAGAAGAACACCCACCCCATTGTAATGAAATATGGCAAGCCTTtccaaattgtttttgttgtatttacagaaatcattatataaaaaaaaataaaaataaaacgacACCAGCTACAGTCTGAAAACACTTGGTTTCCAACTCTGCCACAGGGCATAGGGTGTCTAATACAGTTCTTTAGCTAGCTAAAATCAAATGCCAGGTTTCCACATACTCTATTCTTAAAGCACCACTTTGGAATTTCTGTGAAGCATCATCCAAAATGTGACCAGATTGGTCACATCAAGGTTGCAGTAGGTCTGTGCACTCAGCTGCTGAAAATACTCTTAAAATGCTCACATGACACCAAGATAAGAAGGCACAGTCAGTATATGCACAGGGGGACTGGCTTTGCTCCACTTCTCTTCATTCTCATCAGCTCTGAGAGAAGAGAATAGCTTCACAGCAGGCCTGGTGGTTAATTACAGCATTCAGGACTCCCATCGAGATTTTAAGTACAAGGACGTTTATAAAAGCAGCTTCATTATGGTATGGCCACAAGTGCAAGGATGCAAATTTTGGCCATGAATATACTTCATTAGATTGCAAGGCACTTAAATGGCTCAGTCTGACAAACAAGGAAAGTTAAaggcccagattaaatccaTTTCTAAGTTTACAAATTTCAAAGAACGCTCGTTTCGTTTGCCAAGGGCACCTAAAACTATTCATTTTGGAATTTGCGAATGGCTGGCAAGTCAAGGTTTGGGCCAAagttttacatatatacaattggtactaattattttatatacacacaaatgagATCCATGCATTTTAAAGACTGTAAAATAGATTAATACTTCAGTGTCCTTACAATTACTTTCCTTGGTAATTAACTTCCTACAAGCTAGTTTTACAAAAAAGAAGTGCTAAACTGTCATACTGAAAAAGCTAGAATTAAGAGGAATTcgattttgttttagttttttttttttgtttttgtttttttaaagctaaaaaataaatattctaaaataGTAAAACTATCCATTCCCCAGCTTTTACAAAATACACTTGTTCATCatggggaaaaatataaataaaatgaagtgagTTTAAACAGGCTCAAACACATTAAACAAGGGCCTGAAACCCTGGTAAATCCGACAGTGTCCGTGAACTGGTGGCTTCCACTGCTAAGAGAGTTGTACAGGTTCTCAATAGCGCGGGCAGCCGTGTGCAAGATCGGAGCAACgcccctccccatctctctcttcaGCCGCTGTCCTCGGCTTCGTCGTCCCGGTTCTCCCTCACTCCGCTTTCGTCCACGTTCTCTAGGGACTCTCCGCGCTGGATGGCCAGCTCCGACACCTCCATCAGCGGGAGGTCACTCTGCTCCGGGTGGTACCAGGGCTTCTTGTCCGGGGAGTTCTGCCTCTTCCAATCTGGGTACATCTGTCCAGCCTTGTGCACACTTCTCATCACCTGAGACACGCAGATGGAGAGAGAGTAAGGAGGGTGAACCAGTGCTGTATGC

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106304 lncRNA upstream 83071 14372720 ~ 14373557 (+) True G85185
TU106180 lncRNA upstream 304085 14109527 ~ 14152543 (+) True G85098
TU106172 lncRNA upstream 383503 14069385 ~ 14073125 (+) True AMCG00021292
TU106162 lncRNA upstream 420966 14034215 ~ 14035662 (+) True G85090
TU106156 lncRNA upstream 437687 14016133 ~ 14018941 (+) False AMCG00021296
TU106507 lncRNA downstream 630918 15126767 ~ 15127233 (+) True G85344
TU106508 lncRNA downstream 631440 15127289 ~ 15127965 (+) True G85345
TU106556 lncRNA downstream 760599 15256448 ~ 15260965 (+) True G85380
TU106557 lncRNA downstream 762110 15257959 ~ 15259462 (+) True G85381
TU106605 lncRNA downstream 909927 15405776 ~ 15410610 (+) True G85412
AMCG00021317 mRNA upstream 116672 14321885 ~ 14339956 (+) True AMCG00021317
AMCG00021312 mRNA upstream 258956 14179178 ~ 14197672 (+) True AMCG00021312
AMCG00021305 mRNA upstream 339362 14110458 ~ 14117266 (+) True AMCG00021305
AMCG00021306 mRNA upstream 350688 14080550 ~ 14105940 (+) True AMCG00021306
AMCG00021292 mRNA upstream 383654 14069330 ~ 14072974 (+) False AMCG00021292
AMCG00021323 mRNA downstream 36933 14532782 ~ 14552790 (+) True AMCG00021323
AMCG00021324 mRNA downstream 62280 14558129 ~ 14561490 (+) True AMCG00021324
AMCG00021329 mRNA downstream 99431 14595280 ~ 14596188 (+) True AMCG00021329
AMCG00021331 mRNA downstream 175403 14671252 ~ 14690119 (+) True AMCG00021331
AMCG00021330 mRNA downstream 200738 14696587 ~ 14731003 (+) True AMCG00021330
TU105723 other upstream 2355921 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3469454 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 5033209 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5823218 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 7335391 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 1567751 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2094332 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2160795 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2160795 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2502028 16997877 ~ 17004131 (+) True G85869

Expression Profile