RNA id: TU106403


Basic Information

Item Value
RNA id TU106403
length 280
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G85251
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14549592 ~ 14554392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACAAGATTGTTACACAGTGGCCTCTACGCCATTCCTTccttttattaacattatttttggcCAGTGGTTAAGGCAGTTAAGACATTTTGTAAGTATTATTATACACAAAGGGAGAATGCCAGCAGCAGGTTCTCACACATTTTAACAGCTGGCAAAGGTTGAAGGagtctatatatgtataaattgtatatatacatatatacagtatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccctctttcgccttcagaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 478267 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 478386 14057920 ~ 14071206 (-) True AMCG00021304
TU106210 lncRNA downstream 478386 14069343 ~ 14071206 (-) False AMCG00021304
TU106212 lncRNA downstream 478386 14069343 ~ 14071206 (-) False AMCG00021304
TU106214 lncRNA downstream 478386 14069343 ~ 14071206 (-) False AMCG00021304
TU106493 lncRNA upstream 486671 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 764706 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 826960 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 876650 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 1019234 15573626 ~ 15575997 (-) True G85498
AMCG00021328 mRNA downstream 26616 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021326 mRNA downstream 37324 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021325 mRNA downstream 48703 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021327 mRNA downstream 63570 14467209 ~ 14486022 (-) True AMCG00021327
AMCG00021320 mRNA downstream 100207 14436780 ~ 14449385 (-) True AMCG00021320
AMCG00021332 mRNA upstream 176166 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021336 mRNA upstream 469616 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021338 mRNA upstream 575073 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021341 mRNA upstream 647779 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021345 mRNA upstream 681317 15235709 ~ 15244700 (-) True AMCG00021345
TU106219 other downstream 497695 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 631724 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 921845 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1748006 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2021898 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1686612 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2092747 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2092747 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2744488 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2865212 17419604 ~ 17423418 (-) True G85953

Expression Profile