RNA id: TU106493


Basic Information

Item Value
RNA id TU106493
length 2161
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G85332
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15041063 ~ 15043903 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatagtacactaTACTATACATTAAACTCACATGGGGGAATGGGCGTTACTACAGAAGAAGCCCATTGTTCCAAGTCATATGTTGTAGTTTTATTGTGTTAGtgttactgatttatttatggtgcttataaaatgtattgatatatatatatctgtttgtgtgtatatatacacacacaaacatacacacagctACATACAAgtgtacattattttgaaatatttgagaAGTTCCAATTAAAAAATCAGTCATTGTAGAATCAGAGACCCACCCCTTCTTAAAACTGTACAGTGAGAAATAGACAAACTTTATCACGTACATTTCACGAAagaactatatttttaaaggtgcaAGCtgacaatgcaaaacaaactttAACGTTTTGCGTTATGACAGTGTTTCTTACTGACACTCAAACATAACTGGAAACTGCAAGGACAGCCAATACTGGAACCCCATAAATAACTGGGCGATCAAATGGTTGCTGTGTTTGGGTATTTGACTCAAGCATGTAGAAAACTCATATCATTGTCATCCTTTAGATCTTTAGGATTTATGATTGACAACTATATGCACTTCCATAACTCCATATCTGAGAGCCTAATTGAGTGAAACGCGGTAGTGTATATAAATGATATCTAATGGATCATCTGAATGTGTGGTGAGGTGTAATTGCTTGTACAAATGTATTCTACAGTCTCGGGCTATgagtaaattaaagtaaattaaaagaagCTACATTCACCAAGATGAATATACTGACAGAAAAGATTAACAGGATTATCCGTCAACCATAGGTCCACAAGAACGTTTTTGTACAGTTATATGTCGTACTCTGGGCGCACAAGTAAACACAGTTAACTgggaaacaaaatatgttttatatagcaCATGTCAATTCTTAATATTGATATCACTGTTTTAATATAGATCTACATaagacatatttttaaaaagatacaatAGCAAGTATGTGAGCTTTAAATTTGAGAATTTTAATGTTAAGGTGGTTATAACCCAAAGCTGTACATAGTCTTgttagaaaacatttccataaatatcatTTAAGTTTCGGAACTTATGCccataattaaattacaaattgatAAATATGGCATCATGGATATGTATTTACAAAGTTATTACAAAAGGCAACGGTATATTGAACGGTAACAATCGTATTCTAAAGGTACCACATTCTCCACCTGAAAACGGACGTTAACAACATTTTCGACCCCATCAAACAAGGAATACATTCAcgagtatatatttattatttatttaattttttcaagttcaagacaaaaaaaaaaaaaagactttggCACGTTTCTTAAGACTGTGTGAAGTTTTAACAATCAATTATAAGGCGACACGAGAATCACCATCATCGTAAAACACACCGTGAAAGAttcttccttaaaaaaaataattaaaaaaaaaataataattaaaaaatcattttctgaaatctGGAAACTAAACAATAAACCCCCAtttcaattattgttattatttgtgttattattattattattattattattattattattattattttgttttgtttgttttgaattattattattattatttgttttgtttttttctttcttactcCGATTGAAAGTCTCGTATCCTGAGAAGGGAAAGGCCTTGTTGCTTCTTTTCATTCCCACTCCAATTCTAGTTCATGTCCTGAAATGTTCTtccatccccacccccccctttGTACACCTTTAGGGGGGGTGTTTAGGTTTCCTTAACCTCTTGGTCCATTTCAGAGTCTGCTTTGCTCTATTTCAAACGTACCATTCATTAAAGTTGGGCGGAAGTCCGTCGTTGTGTGTTGAAGTGTTTTGAACGGCTGACGGGGGAGTTTTTGTGGGGTCTTCACTGCTCGCTGAGACCAGGGCTGGTGGGGTTGACGATTCGTACCCAGAACTTGCAGCTGGAGAGGACTCTGACCCCTGTGACTCGTGGACCTGCTTCATGTGTTTCCTGAGAGAGCTGGGGTGTGTATATGACTTGTCGCACACTTTGCAGATGTACGGCTTGTCTGAAGTATGcacatgcatgtgtttttttctgtcactGCTGTTTGCAAATCGTCTGTCGCATCCCTCGAACTCACACTTAAACGGCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106403 lncRNA downstream 486671 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 969738 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 969857 14057920 ~ 14071206 (-) True AMCG00021304
TU106657 lncRNA upstream 275195 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 337449 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 387139 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 529723 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 706648 15750551 ~ 15755446 (-) False G85530
AMCG00021336 mRNA downstream 12753 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021332 mRNA downstream 303320 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021328 mRNA downstream 518087 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021326 mRNA downstream 528795 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021325 mRNA downstream 540174 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021338 mRNA upstream 85562 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021341 mRNA upstream 158268 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021345 mRNA upstream 191806 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021342 mRNA upstream 217019 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021344 mRNA upstream 223137 15267040 ~ 15277340 (-) True AMCG00021344
TU106219 other downstream 989166 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1123195 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1413316 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2239477 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2513369 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1197101 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1603236 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1603236 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2254977 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2375701 17419604 ~ 17423418 (-) True G85953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015560 True 3711 mRNA 0.40 3 NC_007125.7 32011689 ~ 32016615 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_11066680_11069224.mRNA False 2423 mRNA 0.45 3 CI01000000 11066457 ~ 11070260 (-)