RNA id: TU106656



Basic Information


Item Value
RNA id TU106656
length 466
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G85455
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15561745 ~ 15562917 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgcaaatttgctAATTATCTctgagtccagatcattaatatagcttagaaaaagcaaaggccctagtactgatccctgtggaactccactaacaacctcactccagttagaagcgactcctctaatcgacaccctctgtttcctagacatcaaccagttcataatccatctacttacattaccctgaatgcctacagcttccaatctgaggatcagtctttggtgtggaaagAATCCTTGGTTACCTATAGCTAGgCTTTTTGCTGGAGCGCTGTAAAGTCGATCATATATTATCGAACTCACCAGAGTTCTACGTTGGTTCAGTCGAGCACTGGTCTGCCTCAAACGCCTGTCTCCAGTTAAGAAGTACTGATCTACAAGTCATCTGAAAAAGACTCTGAAGGAGACAAGGCACAGAGGGAGCTGGAGAAGCAGACCATGGCCATATATGTGATACGAAGGGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106641 lncRNA upstream 32073 15487242 ~ 15529672 (+) True G85440
TU106595 lncRNA upstream 129381 15428477 ~ 15432364 (+) True AMCG00021349
TU106605 lncRNA upstream 151135 15405776 ~ 15410610 (+) True G85412
TU106556 lncRNA upstream 300780 15256448 ~ 15260965 (+) True G85380
TU106557 lncRNA upstream 302283 15257959 ~ 15259462 (+) True G85381
TU106713 lncRNA downstream 12632 15575549 ~ 15576518 (+) True G85497
TU106723 lncRNA downstream 190165 15753082 ~ 15755432 (+) True G85507
TU106784 lncRNA downstream 357822 15920739 ~ 15922721 (+) True G85552
TU106874 lncRNA downstream 577606 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 726832 16289749 ~ 16292193 (+) True G85674
AMCG00021354 mRNA upstream 8743 15547281 ~ 15553002 (+) True AMCG00021354
AMCG00021350 mRNA upstream 87243 15468503 ~ 15474502 (+) True AMCG00021350
AMCG00021349 mRNA upstream 130297 15428523 ~ 15431448 (+) False AMCG00021349
AMCG00021346 mRNA upstream 181622 15353756 ~ 15380123 (+) True AMCG00021346
AMCG00021348 mRNA upstream 226083 15325459 ~ 15335662 (+) True AMCG00021348
AMCG00021359 mRNA downstream 8633 15571550 ~ 15599716 (+) True AMCG00021359
AMCG00021358 mRNA downstream 71722 15634639 ~ 15644985 (+) True AMCG00021358
AMCG00021360 mRNA downstream 90827 15653744 ~ 15660257 (+) True AMCG00021360
AMCG00021361 mRNA downstream 177818 15740735 ~ 15752170 (+) True AMCG00021361
AMCG00021366 mRNA downstream 217072 15779989 ~ 15784971 (+) True AMCG00021366
TU105723 other upstream 3461038 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4574571 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6138326 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 6928335 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8440508 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 500683 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 1027264 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 1093727 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 1093727 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1434960 16997877 ~ 17004131 (+) True G85869

Expression Profile