RNA id: TU106657


Basic Information

Item Value
RNA id TU106657
length 694
lncRNA type inter_gene
GC content 0.58
exon number 6
gene id G85456
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15319098 ~ 15378748 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGTCAGCCTCCAGACTCGTCCCGTTGTTGTTCTCCCTGTCGTCCACCTCTGTCTTGCCGTTAACACTCCCTTGCCTCTCCAGCGGCCCAGGACAAGAGGGCTCCTCAAGGTGCTCGCTGGGGGCTGGCTGGCGATTCACTGGACTCTCTGCTGCCCGGCTCTGATCTTCAAGCTGCCCTTCCTCCAGCAAGTCCCCTTCGTCAAAGTCCTCCATGTCACCCTGCTCTCCCTCCTTGGCTTCCCCATCCGTGCTCAGCAGGTCATCTCCGTTTTCGTCCTCCTGCATGCCTTGCTCATCTCtCTTAGAATcgttttggtctgtttttcttgtccttttcattatttcctCAATCCTCTTCTTCCTCTCCATGCGCTCCTGATGGTTCCTCTGCAtgatcctctccctctcctgcctCTGTTTCTCTGCCTCCTCCAGGGCCCGTGCCTCGGCCTCCTCACGCTGTAGCTGCAGTTCGACCTGCCTCTCCTGCTCCTCTATCTCCAGCCTGGCTCTCTCCTCCTCAGCCAGACGagctctctcctcctccttcttcttccgttTCTCGGCCAGctgcttctcctcctcctcgcgCCGCACACGCTCCAGTTCTGCCAGAcgcttctcctcctccttcctcagTCTGtctctctctctctctctctctctctctctctctcacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106493 lncRNA downstream 275195 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 764706 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1247773 14069343 ~ 14071325 (-) False AMCG00021304
TU106214 lncRNA downstream 1247892 14069343 ~ 14071206 (-) False AMCG00021304
TU106676 lncRNA upstream 2604 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 52294 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 194878 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 371803 15750551 ~ 15755446 (-) False G85530
TU106752 lncRNA upstream 374340 15753088 ~ 15755446 (-) True G85530
AMCG00021347 mRNA downstream 14366 15287225 ~ 15304732 (-) True AMCG00021347
AMCG00021343 mRNA downstream 36209 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021344 mRNA downstream 41758 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021342 mRNA downstream 55694 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021345 mRNA downstream 74398 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021353 mRNA upstream 5355 15384103 ~ 15387522 (-) True AMCG00021353
AMCG00021351 mRNA upstream 29136 15407884 ~ 15426650 (-) True AMCG00021351
AMCG00021352 mRNA upstream 55292 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021356 mRNA upstream 102103 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021357 mRNA upstream 136871 15515619 ~ 15526183 (-) True AMCG00021357
TU106219 other downstream 1267201 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1401230 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1691351 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2517512 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2791404 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 862256 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1268391 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1268391 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1920132 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2040856 17419604 ~ 17423418 (-) True G85953

Expression Profile