RNA id: TU106676


Basic Information

Item Value
RNA id TU106676
length 2406
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G85471
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15381352 ~ 15383931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttattttgcaaaactttaaacagttcatttttttttttttatcagtacaCTTGAGATATATTTACAAGTAGCTGTGGGCACGGCATTACAAGCACATTACACAGCTCGAGACAAAATGTTATCTTCAGCGCCCAACTGTTAAATGATTGTCATGGCCAGGGTaagctattttgtattttattcggtttaatttattatttattttacaaaaatacacagcCTAATCTCAACCTAAGGCACTGCTCTATTCTAATACATTGCAACCATTATGCGTTTAATAGTTACTCCATATCTGTAACAAACGAACAGGGATTTTCCCCAACAGAACCAGTCTGTGCTTGGTTAAGCAGCGTCCGCCTGGGAGAAGACTGGTGGAAACACGAAGCGCAAAACAAACGAGGAAAAGAAGAACCCATTTCGACAACCCCTTATCCTGAAGCAATTAATGCAGATTATTGACCGCAAATTAGGTCAAGCAATGCAGTCAGTGTTGATGAGTAAAGTGATGAAGAGGGCTTAAaggctatttttaaaagctgtggaGGAgtcaaaacaacaaagcatGAATCAAGAACTGAGCAACGTAACAAACCCTGACAAACTGGTCACTTTCAACTGCTGATACACAGTACTGTGGTAAAACACACTGTGCAGAATGAACTGGCTTTTCCCTTTCCTTACCACAGTAAGACCTCATTCCACTGAATTAGCCAAAGCTAAAAGCTGTACAGTGCCGAGTATTtccttattaaaaaatgaaaggaacaaaaacagaacGGAACGACACTGCTTTTCTCTGTCTCGGATAATCACGTAAATATGCTGGATATAATAGTGACTTTCACACTCCTTTACTTCCCGACAAATACCAGTGGAGGAAACCCCCCCCTCAAAACACGGCCCCTCAATGACTGAAAAGAATCCAGAAAAACAAGCCAGCCGCTGCATTCCTAGAGAAGAGATGGtaggattaattaaaatgtgtgtatatataaaatattaaagttgaCAAAATTAACAGCAAATCTGCTTCTCAAAAATAGGCCGTATACATTAAACATTGCTAACTCATTCCCAAAGTTTTTTTATACCGTCTTCTGCAGACAGAAGTAGACTAAGAAGTGATCTAGTCTAGAGGAGGAATACGGCCTTGAAAACTAGGCCGGCAGCCTCGAGGGTCTGGCAGCCCACTACGTCTGGACACACACATCACATAACCAGGTAACAAGTGGACCGGACCCTTACTCCTGTGCCACTCTGAATCCCGTCAACCCTGAGGAACGAGGAAGGGGGCCTGGTGGACCTGGTGGATAAGACTCCAGCCTGTCTGTCCCTATGTGCTGGATCAAGGCAATTATTACAACCATCTGGAAATAACTTGCTGAATTTCACAGCGCCTCCGAGCACTCCCCACCCCTCACTACCACACTGtcaaacacactctcacacgcaCAAAGTAGAGTGGTAATCgtaaacattttcctttcaagTGAGATTACACATTTCAGTCAGGTCTTGGTAAGGAGACCAAAAGACCCCTGACTAAGTCACACTAGTCTTATGAACAATGCACCCAGAACGGAGACTTGTTTTTCCTTGAAACTGTCACTAGAAACATGCATCTACAGTTAAGAGGAATGGAGATCTAGGTTTTAACATCTACCCTGAAAGGTATGCGTTTGAGGAGGGGACACAAAACCATGTACAGTAACAGATCTCTTAATTTACGTAACCCCCtccaaaagaacaaaaaaaaaaaaaaaaaaatggctttgGAGCCTAACACTGattatatacacaataaaataatactcaCGTGTAACATATGTGGAAATATACtttactatataaatacataaatcaaaacCCAATTAGACTTTCCTTAAAATCACATGGAAATCTTGAAATGGTTTAGTAATGTTgagtgcatgtttgtttttaattggggCAAAAAAGTCACTGTGTATGCAGTACATGGCCCCTCTTAGGAATCATCACATTTCCATTCTGCCAGTAACATCCCAGCCACGCTAAACTTAGGGGAATGCAAAAAAACCAGAcagccaaataaacaaaaatcagaaaaacaggTCACCTGAATGTGCAAAAATATAGCGAACATTAACATTGAATTACTGTCACATATTGACTCCGTTTCCCTACAAATGGATTAATTCATGCAGATATTACCAGCTGCTAAGTGTATTACGATTACATacatattctttcttttttacccCTCCAGGATGCGCTTAGAATTAAAACACCTGACTACAGAATTGTATAGATTAAGaacaacaaactaaaatacagaacgaacaaacaaacaagaacaggCAAATAGAAAGAGCGTATTCCAAAGGACAGAAGAAATGAGGTTAACTTCATTGAATGCAAGCACTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106657 lncRNA downstream 2604 15319098 ~ 15378748 (-) True G85456
TU106493 lncRNA downstream 337449 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 826960 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1310027 14069343 ~ 14071325 (-) False AMCG00021304
TU106674 lncRNA upstream 47111 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 189695 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 366620 15750551 ~ 15755446 (-) False G85530
TU106752 lncRNA upstream 369157 15753088 ~ 15755446 (-) True G85530
TU106760 lncRNA upstream 420805 15804736 ~ 15861947 (-) False G85535
AMCG00021347 mRNA downstream 76620 15287225 ~ 15304732 (-) True AMCG00021347
AMCG00021343 mRNA downstream 98463 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021344 mRNA downstream 104012 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021342 mRNA downstream 117948 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021345 mRNA downstream 136652 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021353 mRNA upstream 172 15384103 ~ 15387522 (-) True AMCG00021353
AMCG00021351 mRNA upstream 23953 15407884 ~ 15426650 (-) True AMCG00021351
AMCG00021352 mRNA upstream 50109 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021356 mRNA upstream 96920 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021357 mRNA upstream 131688 15515619 ~ 15526183 (-) True AMCG00021357
TU106219 other downstream 1329455 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1463484 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1753605 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2579766 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2853658 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 857073 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1263208 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1263208 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1914949 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2035673 17419604 ~ 17423418 (-) True G85953

Expression Profile