RNA id: TU106817


Basic Information

Item Value
RNA id TU106817
length 2757
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G85580
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15976565 ~ 16020742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtCGGGTTTTCACAGTGGTTTAATATGAACACGATTATCTGACATTACATTTCTTGACAGCAGATCTGAGACAAcaatgccattttctttttcttttttaataaagccCAGACTTAAATTCACAGCAGTTACATATGTGAAAAGGTGgctaaataataaaaggatacgaatatatatttatataaggaTCATGTAGTAACAGCATGTTTATATAAAACGTCTCTGTAGTTGAacagggggggtgggggggggtaggTGGTGAAGGAAGACGTCCCATTTtctagtttaatttgtatttattttttggggtttGCCAGTACAGGAACAGATCACCAACACTAGCACCCACAATGCATCACTGCATGTCTTATTTCAGCCTTGCCTGGCTCTGTCTGCTGAAGACAGGAGGGCTCCCTCATAAGCGAGACCAAAGATTGTACAATTAGGCAAAAGAGGGGCAACACTGGTTGACAGGGATTGTTTGATTACTTACTCGAGGTAGCAAGTAAAAAACAAGCACAGAGGAATGTCGTTGCATAAACTGGCACATTTGAGTTTCTGTGAGGAGTGATCTGAGGGGGTATCCCGAGCCAGACCAATGTTTTGCCCTAGTGTCTTTCAGCTGGAGGCAAGCTCAACATTTTAAAGGATtcacctttttttccccatatatatatatatatatatatatattggttggtatatttattaatcactCTGCTGATTTGGAGATTTTAAGAGTAGGATGCAAAATCGGTACAATGTCAGGAGAACAGGGATCACTGAGAAACCCCACCCTGCAGCTGCTCAAGGGCGAGGGGCTGAGAGGCCAAACAGGAGGTGTATTGTACTTGAATTGCATTGTTGTTGCGTCAGCTAGATCTCGACTGCTGGGTTGATTTGTCATTGGACAGGAAGGACAGGCAGCACTCATAGCAATGGGGGCAGAGGTTGGGAAAGGGGATGCAGACGGGAGGGGGAGGttagtctatttatttatatatataatatatatatatatatatatattcattattttaaagcaatcttGTAGAGCATGTACTATACCCCAAAGCCCATGCTTGCTCTGAAGcataacatttttgcatttgtgcGAGTGTGGGTGCAGGTGGGCACCAACAGTCAGCCCCCCATAACAACATACACACCATCTGAGTGGAGATGTACACACATAGCAGGAAGTGCTGACAAAGCCTGGTCATCAGGGGCACTCaaaagaagaggagaaaaaaacttGAATTGGAAAAGATGacagaaggaggaggaggaaggcagAGGAGGAAGGGTCTGAAGCATAGGAGTTTGGAAGAGGGATGTCTGAACTGCTGGTACCCAGTAGCTGTCACAACGATAGTGTGGCAACATATATTATAAAGCTGTGAGCAAACGGGTTTAAGTAGGCCAAGATCTTTCAAGGTGTAGCAGAATGCATGCCTCTCCCTGCCGCCAGGGTGCGCCACTTCCCCACgttcatacacacacagtgacataGAGCGACAGGACAGGCATTCTGCCAACCTtgatggtatatatatatatatatacattatttacatatacatacagacaaaacaaagagcTGAGTGCAGTTTGTTGGATCACCTGTTGTTGAGTCGGCATTGGCTTTACCGTGTAGTTCCGGTCAATGCTCTCCTCCTGGAGGAACATGTGCAGACAGCGCTCGTTCTGTGCCAGGGGGTGTCCTGCGATCCTgagcacacacagagagaggggcggggggggggtggcgACACACTGGTTagagcacacgcacacacagatagagagagggggggcactcactctcacactcaatTGGCATTCATGCAGCACCCACAGAGTGTTGGGCATGTCCACAGGACACACAGCCAGGAAAGGGAAATGAACAGTCCTGAACCAACTGGGCAAAACAGCACTATCAACCCAGAGCCCCAAATAGCAGGGTTTGTGTAGTTTTCGACAAATGCAAAAGCTGATTAAAGTCTTTACAAGTATTGCCACACTGTCTGTCTATACACACCTCAACTGTGGAGGACGAGAGGAAGTCTCACCCAGTATTTACATAATTTGAGTTAGGGGGGGGGCACTATAGCCACACTGCAGTGCCAGCACAGGAAatgcaaaaacagcacagacCAGAGGAAGTCGTGCGTGTACTTGAATGTGGTTTTAGTTTGTGAAATACTCATCACAGCAAACCACTGCATTAAAGTTCATCAGTTAGAGCAGGGGACCGGACTTCAaattcaatcaataaatcatgcaTCGCATTGAGGCTTCAAACgtatgaagaaaagaaaaaaaaaaaactaaactttttcCTCACCTGGAAAAGCTCTTCCTGGCAGAGAGCAGCATGCTTGAGTGACTATACACCTCTCCCTGCTTACATACTGGCGTGCAAGTGTGCAAGAATGTTATTGTGTACGAGTCTCTGTGCGAGTGTCTAATTATGTGCCTGTGTGGGCAGCTGGCAAGCCAGGCCGGGCCGAGTGTACCTGTTGATGAACTGCTCGAGGCCCAGCCTCCGCTCCTCGATGAAGGACTCCTCGAAGATGCCCTCGTCTCCTCGGAAGGGCAGCTGTCTCTTCAGGGCTTTCCCAGGCAGAGGGGGCACCAACCTTactgtctctctccagctcaTTCTTTAACCACTCAAAGTCGCTGTACCGTCTCCGGACACAAGACTCCTTCAGCTTGAAGATGGGGAGGTTTGTCTGTGGAAGAGACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106831 lncRNA downstream 3831 16011231 ~ 16011702 (-) True G85592
TU106828 lncRNA downstream 14312 15993252 ~ 16001221 (-) True G85590
TU106829 lncRNA downstream 18468 15993252 ~ 15997065 (-) False G85590
TU106805 lncRNA downstream 81356 15921022 ~ 15934177 (-) True G85568
TU106806 lncRNA downstream 85754 15924958 ~ 15929779 (-) True G85569
TU106916 lncRNA upstream 158420 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA upstream 245267 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 450810 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 544975 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 670825 16691567 ~ 16757611 (-) True G85802
AMCG00021376 mRNA downstream 7454 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021364 mRNA downstream 145003 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 480399 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 489350 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 526136 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021382 mRNA upstream 99446 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021388 mRNA upstream 188996 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 195694 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 213575 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021393 mRNA upstream 336523 16357265 ~ 16359007 (-) True AMCG00021393
TU106219 other downstream 1963636 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2097665 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2387786 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3213947 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3487839 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 220262 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 626397 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 626397 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1278138 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1398862 17419604 ~ 17423418 (-) True G85953

Expression Profile