RNA id: TU106818


Basic Information

Item Value
RNA id TU106818
length 2398
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G85580
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15976565 ~ 16020742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtCGGGTTTTCACAGTGGTTTAATATGAACACGATTATCTGACATTACATTTCTTGACAGCAGATCTGAGACAAcaatgccattttctttttcttttttaataaagccCAGACTTAAATTCACAGCAGTTACATATGTGAAAAGGTGgctaaataataaaaggatacgaatatatatttatataaggaTCATGTAGTAACAGCATGTTTATATAAAACGTCTCTGTAGTTGAacagggggggtgggggggggtaggTGGTGAAGGAAGACGTCCCATTTtctagtttaatttgtatttattttttggggtttGCCAGTACAGGAACAGATCACCAACACTAGCACCCACAATGCATCACTGCATGTCTTATTTCAGCCTTGCCTGGCTCTGTCTGCTGAAGACAGGAGGGCTCCCTCATAAGCGAGACCAAAGATTGTACAATTAGGCAAAAGAGGGGCAACACTGGTTGACAGGGATTGTTTGATTACTTACTCGAGGTAGCAAGTAAAAAACAAGCACAGAGGAATGTCGTTGCATAAACTGGCACATTTGAGTTTCTGTGAGGAGTGATCTGAGGGGGTATCCCGAGCCAGACCAATGTTTTGCCCTAGTGTCTTTCAGCTGGAGGCAAGCTCAACATTTTAAAGGATtcacctttttttccccatatatatatatatatatatatatattggttggtatatttattaatcactCTGCTGATTTGGAGATTTTAAGAGTAGGATGCAAAATCGGTACAATGTCAGGAGAACAGGGATCACTGAGAAACCCCACCCTGCAGCTGCTCAAGGGCGAGGGGCTGAGAGGCCAAACAGGAGGTGTATTGTACTTGAATTGCATTGTTGTTGCGTCAGCTAGATCTCGACTGCTGGGTTGATTTGTCATTGGACAGGAAGGACAGGCAGCACTCATAGCAATGGGGGCAGAGGTTGGGAAAGGGGATGCAGACGGGAGGGGGAGGttagtctatttatttatatatataatatatatatatatatatatattcattattttaaagcaatcttGTAGAGCATGTACTATACCCCAAAGCCCATGCTTGCTCTGAAGcataacatttttgcatttgtgcGAGTGTGGGTGCAGGTGGGCACCAACAGTCAGCCCCCCATAACAACATACACACCATCTGAGTGGAGATGTACACACATAGCAGGAAGTGCTGACAAAGCCTGGTCATCAGGGGCACTCaaaagaagaggagaaaaaaacttGAATTGGAAAAGATGacagaaggaggaggaggaaggcagAGGAGGAAGGGTCTGAAGCATAGGAGTTTGGAAGAGGGATGTCTGAACTGCTGGTACCCAGTAGCTGTCACAACGATAGTGTGGCAACATATATTATAAAGCTGTGAGCAAACGGGTTTAAGTAGGCCAAGATCTTTCAAGGTGTAGCAGAATGCATGCCTCTCCCTGCCGCCAGGGTGCGCCACTTCCCCACgttcatacacacacagtgacataGAGCGACAGGACAGGCATTCTGCCAACCTtgatggtatatatatatatatatacattatttacatatacatacagacaaaacaaagagcTGAGTGCAGTTTGTTGGATCACCTGTTGTTGAGTCGGCATTGGCTTTACCGTGATGAGAGAATAAAAGGAACAGCTAGGCCCTGGCTCGAATGCACAGCTTCTCTGGATCACTGGTGCTAgattcaaaatgaaattgaataagattaaattttctttttttgttcttgtgtgcgtgtttgttgGGAGAGTTGagacaacattaaaacaaattgtcaaAGATTATCAATACAAGTATGAGGCACCCTTGTGAAGGTCTAATGTCTCTAGCCTCCTTTTTACGGGAAAGCAAGGGCACAGTTATCCCCCCCTCCACCCGTGTATGTTAAGCAAGACTCCAAAAGATTTGTTTCTCCGAACAGGAATTCAAAATTAGCAGCAACCCAGCTTGCAGACCTGACACCTAAACCATGCCTCAGTAGCAACCATCACGAGAATACTCTGCCATGTTAAACACTGGCAAATGAGCCCCCAAAAaaggcgtgtgtgtgtatatatattacacacacacacacacacacacacacacacacacacacacacagtaaagagacgtgcacacacacatgcacactgacAAGAGATGTGCCCACACACGTACACCGCCACACAGAGAAGCACACaaattcactcacacacagaaaacacacagaaatctCCACCAGATAGGAGACAATTGAGAACAGGTGACAGGTGACTGGATTTCTCATGCCCCTTACACTGCTGCACCAGGAGCTCAGGATGGACACTGGCAGTTTAATACACTGTCCAATAAAAGCCCTTTTTTCAGGCATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106805 lncRNA downstream 42388 15921022 ~ 15934177 (-) True G85568
TU106806 lncRNA downstream 46786 15924958 ~ 15929779 (-) True G85569
TU106804 lncRNA downstream 53835 15921022 ~ 15922730 (-) False G85568
TU106771 lncRNA downstream 73198 15863731 ~ 15903367 (-) True G85543
TU106760 lncRNA downstream 114618 15804736 ~ 15861947 (-) False G85535
TU106916 lncRNA upstream 158420 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA upstream 245267 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 450810 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 544975 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 670825 16691567 ~ 16757611 (-) True G85802
AMCG00021364 mRNA downstream 106035 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 441431 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 450382 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 487168 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021352 mRNA downstream 514515 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021382 mRNA upstream 99446 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021388 mRNA upstream 188996 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 195694 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 213575 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021393 mRNA upstream 336523 16357265 ~ 16359007 (-) True AMCG00021393
TU106219 other downstream 1924668 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2058697 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2348818 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3174979 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3448871 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 220262 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 626397 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 626397 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1278138 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1398862 17419604 ~ 17423418 (-) True G85953

Expression Profile