RNA id: TU106828


Basic Information

Item Value
RNA id TU106828
length 6878
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G85590
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15993252 ~ 16001221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNagtggagtccatgcctcgacgggtcaggtctgttttggcggcaaaagggggaccaacacaatattaggcaggtggtcatgatgttatggctgatcggtttacagtacagtacagtcacgATTGATCTAACTAATTGGCCGACCAGGCTGATAGAAACTCATGAGATTTTCTAACCTCGTGTCATAGATGATgtctgaaaaaactaaaacagtacagcataataaatacacaagtaactatcatttgacataaataaccttttttaaatggttCTTCCCCTTTGTCAGTTATTATAGAAGGGATAAGCACTGTGAGGAGAATCAAAGTCAGCAACATTATTAAAGACTGCAATACACCGCACCCTACAAAGGTCTGGACTGAAACGGCTGGTCCCTGAAGCTCAGTGTGAGGAGCCATGCCACGCCAGGCTGTGTTATCCCATAGCCGGTGGAGTCTTTCCATACTGTTTGCAATAACACAGTGCTGTATAGAGTTTTGACAGTGGTTTCTGTGAGGCAGTTAGGAACTTCCAGATTTCGAAACTGTGTATTTGAAACTTtgtgactgtactgtacatgcaaatttaaaaacacaaagataaAAGTCCCTCTGTATTTCTGGTTACGGTTTGAAATGGGGTGGGTGGGAAAATTCTGGAGATATCGTAGTCAGATTCAATCCTGTTGCATTTATAAAATGCTCTAAACGTATCATGTTTTGGCATACATATTGAtccttattaaaacattaaattgacCTAATTTTGATGATAGCACTCCCATGTGGCAAATTTAGTTTGTCACTTCTGGTGTCACCCGAAGCCTCCCACAGGCCATCGCTGTTCACAGAACCCCATCTATTTCACCCAAACAAAACTCTGGTCTGCCTGCTTTGAGCCATATTTGGCACACAGGTTGAGAGAGCAATTACAGGAACACAAAAACAGAGTGCAAGAgatgtgaagagagagagaaactgggGCCTGATCCCTGCAGCCATGGGTTGTGAAATACTTTGGGTAGTAAGACTCCATTTGGGCTCCAGATGCAAATGAGCGAATCAGAGAGACAGGGCATTGGCACCTGTTTGTGAAGGTCAGACTGCAGCTGACATGGGAGAAGGAAACTGACCAGCTGCACTCAACCTGGAGGcatttcagacacacacacacacaaacacacagatactgTGTTAGTCAGACCCTGAGTCAGACGTTgaaacacacgcacagacactgacacaccctgacacacactcacacacacttgcacacacacaggcactgacacagagagagagagacagctgaAACATGGCGAGAGGGTGCGGATGACTTGAGTTCTCATGTCCGCAGTCTGTCCTTGGGCAACTTATTTTcctggttctttttttttctttatttttaacgAAACCCTATTGCCAGTTTTTGTTCTCCCGTTTTCTtgccaattttttttatttatcagtgGTACGAATTTGGGCATCCTGGTCATTAGATTACAAAACAGGATAACAACaccaagaaaagaaacaatgaaacaaaaggaACAGAACGCAACAATAGCAAACCAGCAGGGGCCGGTGCTGTGATAGGCCATGATTGTTATTCATGATCGTATTCATCCTTGGCATTGTGAGCACCCGGCTGACTGCTTATTCAGCGGATATGAAGTGTGATGGCTGAATTACTGAACTGGCATGAAGATATTCTGCCTGAATTGGAGTGCGTGGAGCTTTGGTCACCTGAGTGGCAGAGCAGCCTGACGTGACGTGACGTGACGTGTGAGATGTGAACTGTGACTGTGGTGAACATACTTTTAACTCGACAAAGGGCATTTGGTGGACATCTTTACCCAAAGGTGATTGGTGATGGGGTCAGTGTTTgatttttatgatgatgattgctattattattgctgttattttttgttttttaaatcacaggACACCCCCCAACAATGCAACTGCAGAACCTACTGTGTGTTCTAGAGCGCTCATTGAACCATTTGGTTCTAGAACCCAGCCCCACTGAACCACTCAGCAGAAGTGGGTTTAATGCACAGGGGTTTGCTTTGATTCTCTTCTTGACATGCTCGGTGTAAATAGTGtgcaaaaaacagaagaagaaaaaaggaaaaggtacCATTCTGTTTAAACGTTttgtattaaaaagtaaaaaaataataataatctcacacacacacacatactcacaaaTTCACACGAGGCAGCTCCTAAAATAGAGTTTACAGCCTTTCTTGTATGACGAGGAAATGGCTGATTCTGAAATCGAAATATTTCCTATTACgctgattattattacatatttcataCTAACCAttttctaagaaataaataaatgaaaaagtatatTTGATTATAATCGTACTAGGAGAGACGGATGAAAGTTATCTGAAAAATCGCATTAACagattgaaatatattaatgattttttttaaacagaaaagaaTATAATTTCAGATCATTTTTAGCAGTCATTTTTATATCCTTTATATTGTGTATAAGACTAAATACATGTAGATTTGTACATAAACCAAAGGAACACTAACTCACTACGTACTGAATGGGAGCGGTGGagtgaaaagtattttttcggCATTTATAAgcttaaaagtttgttttaaaagtaaatcagTGAAGAACCAAAGCAGGCTTCTTTGGGGTTGGGGGACTTGTTAGCTTGAGGAGAAACTTTTTCTTGCAGTGAACAAAACAGGTCATTTTAAGCCTGCTGGCAGCTGGGTAGTCTTTCCagcatgaaaaacacacaaacggTCCTAAATGACGGGGAACAAGTACTTTGGTCCCGACAGTCACTGGTTTTATTCACAACATTTTTCTAATTGATATTGATCGGGACGGCCTGGGAGTTTTACTTGGTGGGGGCTTCTCAGAATGTCCATCGCAGGACGTTGCTCCTCTATGCACCTGCTCTTCTGGGAGTCAAAGtcgttttaattttcttttatttcaacaaataaatgcataaaacaaacagatgaaaAACACTCTGTATATATGTACCACCATCTTAATGGTGGATTTACTTTCCTGAGTTTCccccaagaaaacaaaacaaacaaaataaaacaaccaagCACACAAAAGCTGGTTTGAAGCACTAACATTGATGTATCGACGCTACACGTCGGGCCTCTGGCATTGTTGTTTGAGTATGAGGACTATGCATCTTTAGCACCCTACCCCCACTactatgaaaaacaacaaagcaaaaaaaaaaaaaaaaaaaagtgcaatttgCCTTTTGACATTTCTGTGAAATTCTAGCGCAGGCCTCAGAAGACAGGTGTAGAGCTGTAGTTTGGGCCCCAGGGAGGAGGGGAGTATATAGGCGTATTGGTCGTATCAGTAAAGTATCAGCACTTGAGTGAATCTGTTTGGCACTTTTTGGTTCCCCAGACCAGGCAGTTTATACGTGCCTGGTCTGGTAGGGATAAGAGTAAAGAGGGACACACATTCCAAAAAATGAAGCAACTGCTGATAATCTCAACTGTCAAGTTCACTTGAAGCTCAGCTGTGGAGTGCCCCCTGCTCTGCATCCTGTTAGTGattatttttaagcaaatttagtttttcctcCAACATCTCAGTAGACagactgttaaataaataaatagatatagaGATAACGATTCTAAATTAAAGTCAGATGTGCTTAAATGTTGACTTGCCATTAACTCTCAGGgtggttaaaataataatgataaaactgTTTGGGGgtgattacatttattaaatatggaaatataataaataattgaataaacagtaaatattttttatatgtgaCTTTGAAAAAGggagaattaattaaatatatatatatatatatatatatatatataggctggAATTTGTGAAgcctttatttgtttacaacAACACAGCGGATGCAGCAAGGCAATGTGTGATGGGGGACGGGGGGCCAATTTTCAATGGCTGTGTTGCTCTTCATCACTCACTCACAGTGGATGGCTGTAGACTGTAAATAGCATTACTACCATTTATActagtgttattattactacaattactttattaatattgttttccagTTCGGGTTTGTTTCTGGGATACGGATGACGGTAAAACTCATTCAAACTACAGCCTAACTTTCACATCAGGGCCGtccacaacatttttttttttttttttttggtttggagtctgcagaaatatttttctcttaGAAGGAAAGAAACACACCAGACCTGCCCAGCTGCTGTCAGGGCTGTTAGTGTCTCACTTAAGAGGCTGTGCAAGGCAGGACTTCGAGGGGCCTGCTGTCCACAGATCCTCGGAGCCAAGCGCCCGAAAGCCCTTGGGTGAAAGCAGTGACACTTCCAAGAGGCAGCTGCAGGTTTGTCCCCTCGgacacaacacagaaaatagGGGCCTGTCTCCTGTCTTAAAATGTCTGATTGcacttagaaaaataaaaacaaaatcctgttttcgtcacatgcacacacaaaataatttcctggctcattGTCTTGCATCTATTTTGCAGCGTCAGGTCTAGTTTGTGTCCTCCATGTAGTGCCTGGGCAGCAGTGCCATGTTGTCCCGCCTGACTGCCCAGGTGCTGTGGTTGAACAGTGTGCTACCCTTCCCCGGCGTGATGAGGTTCTGTTCCTGTCCAACGCAGCCtcctttgcaaaaaaaaaacagaactcaCTTGGATGTTGTATATTGATTGTGAGAAACTGTCCAGAGACACTAATTCTACAGTTTTATCAGAGCAAGTCATTTAGATATAGTTTTTACTTTTatcagtttttcattatttgggGAAAATGTTGTAACTAGTTTTGCCCTACAGGGGCGATTTCCTGATCTGTTCGCTCCCAATCCAAATCTTTTACTGCCTCCTTTTTTAACTTGAGtcttctttcctctttttcctTAAGTAGAATTTTTTATCCAGactgattattataattattactattactattatttttttaattcccaaaGGTAGCAGTAGCAGCTAGAATAAACTGTTCTAGTAGCATGTGTTTGTAAATTCTCAGCCTACAAAACTAAAccgtttttttctttcttgctttcaaCAAGTGACGCCCGTAGCACTGCTTATGCAGCAGTGGTGGGCAGCCTGTTCCCAGAGGGCTGCAGTCAGTCCTGCAGGTTCTGTGCCTCTCTCCCTACATACCCCGCCGACTCATGACACAGGAAGTGATGCTCGGTTGGTTCACGTTAGCAAATAAACGGTTTAGTGGAGGAGGAACAGAAACTGAGACACCATGGTCCCCACCTGCAGGACCACAGCTCCCCGCCACGCCTTTGTATAAGATAGGAGCCGAATGCCAGAAAGACAGGCAGGCCACACGTGACACCAGTTCTTTTCAGAAGTTAGTTTTTTAACTGAAGAAAAGCGGCATGGCTGGTCCAGTCCTAATGGACCGAAGGGGGGACTGGTTTGCACTCCATCTCAGgtcttaattggttaattggagTCACAGAATTTAAATAGTCCGTTCCAGTCTTTAgtcttttagtctttttttttgtttgtttgttttgcattgcaaGGACATTTTGCAAAAACGGTGATGAGATGACTGTAAGCAGGTGACTGTGCACATTGCGACAGATGATGATTTGCAACTGCTGCGGGTCCCAAGTCAGAAGTCATTACCCAACGGCAGACACCGCCTTGATTTAAATATAGTCTCATCACACCCAGGCGTTCACAGGCCAAGCCCAAGGCCTTTCGATTTGTGACTGGCGCAACCAGCTCTTGCACTTACAATAGTACTGGAATTAATTATCTTTCAATCATACGCTTAACGAGCTGTGCCAAAACCCTAAGCCATAATGGATTTTAATGGTTGGTAAAGGGTGTATAAAGTTCAAAGAAAAGGCCTGGGTTTGCTCAAAATGTCAAACACAATTGAAGTAATGATTTCTTCTTTGGGACACTGAGAGCTGGTgaatcagaaacacacacacacaaacgaaaAAATGCAGGACACCCCAGGGTATAGGAGTGAATATCAATgctatttcctttttatttgatttatttttattaggttTTTCATGATTAGATTTTAACTGCTTTTTGATTTAGTCACTTCCACTTGACTAACAGGAATAATTCTGCAACAAAACgagagcagaaaaaaaacaatgcttggACTACCCTATGTGTGTAGCTCCTCCTGGGAAACAccatttgaatgttttacagTTATTTGATCCTTTTTTGGGgagttttgcttgtttgttgtgttcATGCCACTGTGCTAGGAACCTGTCCTTCTGAACTGCTCGAATTGGATGTTGTGTAGTGTCCCCTCAGTAGGTCCATTGGGCTATGTGTGTGGCTGTGGAGAGGTTGTGAACTTTAACCCCTGAATCACTGCTTTTTGGCCACACCTGACAAACATATGCAggaattttgttatttgtttttatttttgccagtatttgttttgtgtattaatatatatatatatttttttcatgttttgtatatGATTTCTTCTTTCAAACAAGTTGAAAAGTAGTGAGTTTTATTCTAGTTTACCAAGAGAATTGTAACCATCCCATTTGATTATGCATTGTGttagtttttttggggggggtgatGTTGGGGTGGGGGAGTTAAATTGTGCGTAGCCAATATCTGTTTCAATCTAATTCATTACTATAATTcaggttgtcttttttttttggcgggGGGGAGGTTCTGATCACAGATCTCACTTTACATATTGTAAAGTTATCCAGAGGCTCCAATCTGAACCAAGTTTGAAAAAAGAAATTGGAATTGTTAACacattaaattgatttttttattgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106805 lncRNA downstream 59075 15921022 ~ 15934177 (-) True G85568
TU106806 lncRNA downstream 63473 15924958 ~ 15929779 (-) True G85569
TU106804 lncRNA downstream 70522 15921022 ~ 15922730 (-) False G85568
TU106771 lncRNA downstream 89885 15863731 ~ 15903367 (-) True G85543
TU106760 lncRNA downstream 131305 15804736 ~ 15861947 (-) False G85535
TU106831 lncRNA upstream 10010 16011231 ~ 16011702 (-) True G85592
TU106817 lncRNA upstream 14312 16015533 ~ 16020742 (-) True G85580
TU106916 lncRNA upstream 177941 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA upstream 264788 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 470331 16471552 ~ 16471759 (-) True G85716
AMCG00021364 mRNA downstream 122722 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 458118 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 467069 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 503855 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021352 mRNA downstream 531202 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021376 mRNA upstream 998 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021382 mRNA upstream 118967 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021388 mRNA upstream 208517 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 215215 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 233096 16234317 ~ 16242423 (-) True AMCG00021387
TU106219 other downstream 1941355 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2075384 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2365505 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3191666 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3465558 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 239783 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 645918 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 645918 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1297659 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1418383 17419604 ~ 17423418 (-) True G85953

Expression Profile