RNA id: TU106831


Basic Information

Item Value
RNA id TU106831
length 451
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G85592
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16011231 ~ 16011702 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCACCGCTATATATGAATTAAACTTCTGCAGCTACAGCTGTTGTCTAAAGGCGAACaatatttctgaattattttgaaCAACCCTCCAGTGCTGATTTTTCACCCCCCTTCAAACTCGTAGGCCCGATACACATCCCCACCCCCATTCCAATCATCACCTACACCGCTCAACTCACCCGCATCCGCACTTCGTAGGTGGTAAAGCGGTTCCTCCCTACCCCGATGGTCTGTGGGTCGTAAACGTCTATTTCCAGAAAGTTACTAGGAGGCCCGTAGGCGTCCGTGAGGTCCTGAGGTTTGGAGTTTAACCGGCGAGTGTCAGCTACTGTAGGCTCCGACATTTTCAGCTTCGAGCAGCCACCCCGGGGTCCGCGAAGGCAGCGAGACAGCAGCAGAGTAGAGTAGACCCGCCCCCTCCGCAGCACCCTGGCCAATGGGCATCGAGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106828 lncRNA downstream 10010 15993252 ~ 16001221 (-) True G85590
TU106829 lncRNA downstream 14166 15993252 ~ 15997065 (-) False G85590
TU106805 lncRNA downstream 77054 15921022 ~ 15934177 (-) True G85568
TU106806 lncRNA downstream 81452 15924958 ~ 15929779 (-) True G85569
TU106804 lncRNA downstream 88501 15921022 ~ 15922730 (-) False G85568
TU106817 lncRNA upstream 3831 16015533 ~ 16020742 (-) True G85580
TU106916 lncRNA upstream 167460 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA upstream 254307 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 459850 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 554015 16565717 ~ 16566021 (-) True G85771
AMCG00021376 mRNA downstream 3152 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021364 mRNA downstream 140701 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 476097 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 485048 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 521834 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021382 mRNA upstream 108486 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021388 mRNA upstream 198036 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 204734 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 222615 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021393 mRNA upstream 345563 16357265 ~ 16359007 (-) True AMCG00021393
TU106219 other downstream 1959334 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2093363 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2383484 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3209645 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3483537 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 229302 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 635437 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 635437 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1287178 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1407902 17419604 ~ 17423418 (-) True G85953

Expression Profile