RNA id: TU106874


Basic Information

Item Value
RNA id TU106874
length 3709
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G85623
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16140523 ~ 16169886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacacacgttttctACCATGCTTCACCTGAGGTTCTTATTTCCTGTCCCTGGGATCGTTTGGGGTTTTGTGGTGTCTTGTTACATGGATGCTTGTTACTGTGATGTATTTGAACACTTGTTTatgactgttttattattttgttgttccttcccctcccccccgcCTCACAGGCCTTTGTTTTAGGGCCTATTGCTTAGCAGCGACTGCATTCTGGAACACCCCAGTGTGTTCTagacccacccccccacccctgcccgCCCAGTTAGTTAGCTCTCCGATTGTGTTCAAGATTCCAGCTCTCCCAGTAGGTCTTggtcagatttaaaaatatatatttatttaccctCTAAGTTTCTGGTGCCCGTCCCCGGGTCAAGGGTGCTGTGAAAGCGCGGCCGGCCGAGctgtaagaaaaacagaacGCAGAGCTGTGGAACAGACGTGTGTCGTAAGGGAAGAGAAATGCTAAAAGGTCTGTTTCAGTGAAGAGCAGCGTCTCTGCTCAGCGCAGGCCCAGCGGAGCAGGGGCTTGTGGGCAGTCTACCAGGGCTAGGCCTTCGTGCTTATAGCTGCTTACCTTTTGTGGATGTTCAGAGAAAGCATTGTGGTTAGATGAGTTTTCTCTATTTTACCTCCTGATGCTTGAGACCTGTCCTGCATGTAGGGCATAGGTAAATAAGCTGCAGATTTGGAACCGACCTGCAGAGACCAGGTGAGGCCTAGCTCTTCGGTCATTAAAAACTGATAGTCCACCGTAACTGATACGCCTTTTTTATCCCTCCCCCATGTCTTTTGGAACCTTGTGATGGTCCTTGTGGCCCTAAAGGCAGTCCAGCACCTGGGAATTGCACTCAAATGGGCAAACAAATCCTGATACAGTACCTGTACTGGTTCAGTCTGACTCACCTGAAAAGCCACTTTCACGTCATTGACGTTTTCCTCTGGCTTGTGTCTGTGCTAGTGGAGTCTTAGCAGTTGAcagcctgactgactgactgtcttgTGCCGAGtagtagttgtttttttgtattggcaTTTGTCACGTAGATCCATCAAAGGCTTCTGTGTCCCAGGACTACAGAGGCCCGGTGTCTTCTGGTTGGCTCACAGCCCTGTCTGTATACCCAGCAGGATCTCCTCTGTACATCACGAAAGCATAAATCCAACTACTTACTTAATTTGGCCTTCAGTATAATGCCACagtggtagttttttttttttttttttttccctgttatGCTTCATTTTTGTCTTTCCCTCCTACCTTTTGAGACACAGTGGTGGTAGCAGTTTGGAGTCCTTGCCGAGTCACCCTTCTGATGCATGCCTTTCAGAACAGGAGGTCAGTCATTCCAGCCCCAGTTTTTGGATTTCGGTTTGAAAAAAACTATCGCTACCACATtgattttgtgcgtttgccAGCGTGAGCTCCAGGGTGCTgtagagtgagagtgtgtgcaagagtgaatgtgtgtgagagagagcgagagagtcaAAGCAGGTGTAGTAACTGCATTAATGAATCAGAGCCTGATTTCTAATTGGCACAGTCAGCTCCTTTACTCTCCGAGGCACAGTGCTGGAAGTTTCACGGCATCGTTAAAGTCAGTGAGAAATGTACAGCAATTAGCACAACAATAAAGAagtgaaataattatatatataaaaatagcttccaaatgcacaaaacaaatgctgtttGCTGGAATGTAgatggatggggggggggggctttatACTATGGAGGAAGTTTATATGAACATATAGGGGACATCTGTtaagtaaatgtattgtttctgttacTGTGGTGAGAAAAGGAAAgggtaaaataaagaaaatttgTATTACAATGAAAACCGGGGTGCCTACCCCTGCAAGATGTTTAGTTTCTGTACCGAACAGCTCTGGGCTCCATGCAGTTTGGGCCGCTCGCGGTGAGCAGCACAGTGTGATGGACTCCCTCGTATCCTGCCTGCCTGCTGCCAGGCGTGATGGTTCCAGAACGCCCCGTGCCCCAATCAGAGCAGGCCCCCTCCATTGttcttcgttttttttttttttttacttatttattactaTAACAACATCAGCACTTCAAAGTGTCtctatctatgtatgtatgtatgcatgtatgtgtgtatgtatgtatatgatcATGTGAACATACATTAACCCTGGTTATCATGCTCcttatgtgtgtgtacacttcCATTTCACTAGTATCGAGAATGAACTTTTTTTCACGGGGGTGTGGGGGAATGTAGTGTAACTTTGAGGACAGGCCGGCCCTGCTTATTCTGAGCCTTAGttgatgctttttctttttcccctgaGAAGGTGCAGAGCCCCCCTAACACACCCCCCAAGCCAAGTTATAAAAAAACCTAGAACTGTGCCGATTTCTCTACTGTATGCGACCTGTCTGGCTGTTTCCGTGTGAGCCATTCAGCCAGCAGAACCTGAGGAATAGCAGAGTGGCCCAAAATGACATCATTGTTTCTGTAAACTGACCTTGAATAGGAGTGCAGTGCTGCCCTGCACACACAACCCCTGGGCACTTTGATGTCCCTGGTTCCGTTCCCCAGGCAGGCTGAAACCAGCACCTGGAAGAGGAAAGACCAGACTGCACAACTGCGGTCCCCAGAGAGGCTGTGGCCTTTATCATTGTTTCCTGTGTCACTGTGAGCAGATCTACCCCCCACCAGCCCGGTGTGCTGACACAGTACCTGCAGAGTCTCCCCCCTcggtggtttgtttttttgctttctctttctttttgtttgttagtttttctgcttgtgtttttcctcttctctgTTGTCAGTGTTTGTGAAAATTTCAGGACATCTCTCAACATTTCCTCAGCCGCTGCCTCatcttttgtatgtgtgtgcctgtgtgtgtatatgtttgtgtgtgtataatatataaacacactgcaatgtacactttttttttttttttttctaaacttaAGATATTTGcattctataaatatatataaacactttatcatttgtatttaaaatcagaGGAAGGAATGCTGCATTTTTTCTGGTTCATTTTTAATGCCAAATTATTCCTCTGATAGGGAGAAccaccttttttttattattattattattattgtacatgtatttataacagCAGAATATCAGGATTTAAGGTCATATAGTGAAACAATACAGATCatgggcttttattttttaattcatacagAATTGCGATAAACTGGGTTACACAAAGCtgtttgggggggggagagaaataaaggtcaaaggtcatccTTAGGCAGTGTATGGACATTTATTTGGCCACAGCATCACATTgttttcctgtctctgtttttgttgtttttatgaacCGTGGATTCATAACTTACACTGGAGCAGAAGGGAAAATGTGTGCTGGCCCTGTAAGGTGCGCAGTGTGGGATTTGGTGCTGCAATTTTGGTGCCGGCTTCCCTCAGCCGTACCTCTGGAGGGTCAGGTCGGGGAGGAGATCCTGGTTTCCAAATCGTGCTTcacactgctgcctcacagtgCGAGCTCTGGGCTGGTGAGGGGCGCTGTGCGTAAgctgcatgttttgttttgttttttgtactaaataagaaataaatacatacatataagtac

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 217802 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 385091 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 564005 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 573697 15515453 ~ 15566826 (+) True G85426
TU106656 lncRNA upstream 577606 15561745 ~ 15562917 (+) True G85455
TU106936 lncRNA downstream 119863 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 377771 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 399561 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 402307 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 414431 16584317 ~ 16584765 (+) True G85760
AMCG00021377 mRNA upstream 9265 16125521 ~ 16131258 (+) True AMCG00021377
AMCG00021379 mRNA upstream 27103 16111308 ~ 16113420 (+) True AMCG00021379
AMCG00021381 mRNA upstream 29664 16110416 ~ 16110859 (+) True AMCG00021381
AMCG00021383 mRNA upstream 32841 16106498 ~ 16107682 (+) True AMCG00021383
AMCG00021384 mRNA upstream 37314 16102973 ~ 16103209 (+) True AMCG00021384
AMCG00021380 mRNA downstream 6476 16176362 ~ 16181822 (+) True AMCG00021380
AMCG00021390 mRNA downstream 13937 16183823 ~ 16184805 (+) True AMCG00021390
AMCG00021391 mRNA downstream 30059 16199945 ~ 16202371 (+) True AMCG00021391
AMCG00021385 mRNA downstream 53018 16222904 ~ 16232810 (+) True AMCG00021385
AMCG00021386 mRNA downstream 86579 16256465 ~ 16270872 (+) True AMCG00021386
TU106850 other upstream 66905 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4039816 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5153349 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6717104 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7507113 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 420295 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 486758 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 486758 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 827991 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2078604 18248490 ~ 18249686 (+) True G86121

Expression Profile