RNA id: TU107049


Basic Information

Item Value
RNA id TU107049
length 2793
RNA type TUCP
GC content 0.46
exon number 1
gene id G85764
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16590181 ~ 16592973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAAGACGTTGATGGGGATTGCAATGAGGATGTAGAGCAGGTCTCCGAGAGCCAGGCTGGCAATGAGCACGTTGGGGCCATTGCGCATGCACTTGTTCTTGTAGATGATGCGCAGTAGGGTGGAGTTCCCGATGATGCCGACCACGAAGATGAGGCAGGACACCACGGTGTTGATGTACTTGAAGGCGTGCTTGATCTCCGTGGGCTTCACGCACATGGGGGGGTAAGGGCCAatgcgggggggcgggggtttGGCAGGGACGTCCGAGGAGCTGTTCCAAGCCACCTCCACAGCTGCCGCCACTCCCGCGCCCACCGGTCCTGCGTTCTCCCTGGGACTCGTCTGCGTGGTGTCACGAGGGAAGCGAGTGGCTGCTGAGCCCCCCAGGTACAGCACCAGTAGGGACAGCAGCAGCGTGGCCTTCATTGTGCTCAGTGGGGGAAGGGAGGGTGTGTGGGAGCGCCTGGATGTGAGAttggggttggggtgggggggacagggaTGGAGGGAGGTGTGGGGCGGTCAGTCGTGTGTTCAGATGAAGGTTCTCGTCTAGGCACTATCctgcagaacaaacaaaatcacagtAGGGtcattgtctgtctgtccctctgtctcctACGCAGCCACAGACCTCTGAGGGAAGAGCACAGAAGATGACAGTGGACTGTAATCAATCTTTAAACACATTACTGACTGGGTGATTCATGGGTACAAGCTAGCAGTGCGTACCTATCAGCAGCACACATGCAGGGTGAGTTTGAGACAGGCAGAGGGGTGTATTCCCATCGGCCTGTCCTGGTATTGAGCCTCTCACTGTTGCACAAGTGGGCACTCCTTGGCTGGCGTGTCACTGTAGTGCAATGGCGGTTGTGCCATGGTGGTTTGTAGCTCTGTATGCTTATGACAGGTTTGACAGCACTCCCTAAACCAATCAGTGTGCATTCATGTGCGTTTCTTCCAGAGAGGACTGGACACTGGCAATACATCATGGGGCAAAAAAGACAACCTAGAAGTatgtgacagtactttttgcatttatattactggatatacattatttttatggtagtatgcaggttaatatcagtgatagtttgtaatcgaagtagtgtagtgtaatatagGTTAGGAATTGCATGCATCAGTAGCAATATGTAAAAGTAAGGAGGTTAGCAGCTGTATTATAATATCAGGTATGTGCATGATAGTATGTAAGTTACTGTAAGTAACTGCAAGTATTATTTatcatacaatggaaatagccCAATGAGTAATTAGGCTGTTTTTACATAATAACCGTTTTATGATATGCAAATATGAGCCCAATAATGAAAAGAGAGTGGAGTAGAATGCAGCTTAAAACTGTCATAAgggaaaataagaaatgtcTTATGGGACCAGGGGCCAAATATGAGGCTGTGACACTTTTGTCCCCTACtagaaaaaatacagtaaatcatAGTGGTGTGTAGCATGTTAAACATGTAATATATGGTAAAGTGTAATATGATGTAACGTGGTAAAAACAAGGGGACATCTTGTAAAAACATTGGGAAATcatggtaaaaacatggtaaCATTTGGTTAAAATGTGGTAAATACATGGTAGAAATTTGCAGAGACCCAGAGCTGTCAGTTGCTCAGTCCCATAGCTGACTATCACCTTCATGTCTCCCTTTCTCTATATCTCAGTCATCACTGTTATAACACATTTGCAATCATTAATTTTGTATCGTTGAGGTTTGATGTCCCTCAGATCGTGGTCACTTTGGAATCTTAAGCAGAGGTGGAGAATTTGAGGTCCACCCCAGGACACGGTACTGTGTTACAATGCTACCACAGTAGCACTATACactttactgttgtttttaccacagtgcAGCACACTACATTTTACCATGTTGTTACTACAGTACACCACACCAAACTTTACTCTGATTGTAGCATTGTACACCACACTACTTCACTGTTTTTCACCACGGTTCATTACACTACATTTGATCGTGTTGTTACCACAGCGCAGCACACCGCCATCATGCACGGATGCCTGGAAACACAGATCACTGTTCTTCACAGGACCACTTCCACCTTTGCTCTTTGctcttgctgttgttgttgtttaatataCATCTGTTTTAATTGTAACTGCCTGTGGCGGGAAGTGAAGGAAACATTCccattaattgcattttcttagtattattctattaattgcatttttttatcaATAAAGGCCCTTTACCCCCCTGTGAAATAATCACTATACATAATCCTAGAGATGAATtccactgtatactgtatatgccACTGGTACTGTATATAGACCCATGCTTCTCTGTGCCATAGACTCGTGCGTGTCATTCAATTGCACCCATGACATCGATCATGGGGCCCATATTGTTGCCGAGCGATTCCTGGTCTCGGGCAGCTATCACAAGTTCGCTCCCTTCTCCACGCGCCTCCTAGCCTCTCAATGGACTGATTGACTGTCTGAACATCTGCAGGGCACACATGAGCCCCCAGGCCAGTCAGGGActttgattaatatattttttcctactgagacaaaaaaaaaatcaaacaacgAACTCTAGCATTCCTTGTCAAAAGACCCTAGGGGTACAACCACTGTGGGACCATACCGGGGTAACAGTAagcactctctccctctttcttcctctcatCTTCCTCTCATCTCTTTTTCACTTGCTTTTTTTGCATCCCTCTCACCATCCCTCTACCATCCCTGGAAGTCTCAATGGGTTTTACTTTTGCTgtaataaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107047 lncRNA upstream 770 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 5416 16584317 ~ 16584765 (+) True G85760
TU107042 lncRNA upstream 17313 16572193 ~ 16572868 (+) True G85758
TU107041 lncRNA upstream 20531 16569447 ~ 16569650 (+) True G85757
TU107030 lncRNA upstream 40836 16547657 ~ 16549345 (+) True G85746
TU107051 lncRNA downstream 3228 16596201 ~ 16596902 (+) True G85766
TU107071 lncRNA downstream 54166 16647139 ~ 16649848 (+) True G85784
TU107124 lncRNA downstream 214833 16807806 ~ 16809314 (+) True G85823
TU107184 lncRNA downstream 443599 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 493779 17086752 ~ 17087794 (+) True G85903
AMCG00021403 mRNA upstream 10637 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021401 mRNA upstream 28405 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021399 mRNA upstream 34536 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021400 mRNA upstream 44682 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021402 mRNA upstream 54365 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021407 mRNA downstream 43382 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021408 mRNA downstream 60467 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021415 mRNA downstream 161960 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021416 mRNA downstream 185609 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021417 mRNA downstream 204685 16797658 ~ 16806805 (+) True AMCG00021417
TU106850 other upstream 516563 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4489474 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5603007 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7166762 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7956771 8631727 ~ 8633410 (+) True G84301
TU107079 other downstream 63671 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 63671 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 404904 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1655517 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2686792 19279765 ~ 19282915 (+) False AMCG00021485

Expression Profile