RNA id: TU107071


Basic Information

Item Value
RNA id TU107071
length 2230
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G85784
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16647139 ~ 16649848 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaggcatcgaccacatcaaaccagaggagcttttccagttcagcggggacacatgcacccggggacacaaatggaagttgggcttcaaggcattcaaaacggaaaacaggagacacttcttcacacagagaggcgtcacaatctggaacaaactctccagcgatgtggtagaagctgaaagtttgggaacatttataaatagactggataggatccttggatcacttagatattaatggacaccaaacgagcacgatgggtcgaatggcctcttctcgtttgtaaactttcttatgttcttatatatatacacagttatttatatttatttatttgtatacacaCACCCCTCAGGGACCATCACCCTGTAATTGAAGCAAgtcaaatcaaacaaagcaaatattCCTTAGCCtatacagttaatttaatttgagccAGAGCATGGAGCAGAGCTGCAGCAGCTACAAACTGGCCAAACCGGAGCAAAACTTCAAAATATTTGCGGCACCGAATCCCTGGTTACAATAATGGACACCAGCTGTAGTGCTTTCTTTCTGATAGAAGAACACTACAGGTCAGACTACACATGCAGCAAGGCACAACAGCACGATGGAGTTCACGCTCGCATCCTTGCCTTTCCCAAACAGCCCCTGTGCTCTGCAAGTCCTGGTGGCTCCCAGAACCTTATTTGACATGATGCATTGCGATCGGCCTGGGAATAGGGCCACAGAGTTTGGCTCTTTCCTTCCAtgatagagagaaagaaacaaggTGCCACAGACGGGCAAGCCAGGCAAAGTGGTGCTGCAGAGCGTACCCCGCCCTGGCCCTGACAGAGATGCAGTACTTACTTGTGGCCCCCAGCCTCCTGGTGTCCCTAGCGATGTAATTGGCAAAGATGATCGACCGCATGCTGGTCTTCCCAGACCCACTCTTCCCCATAAGCAGCACctttttctTCATGGCTGTGCTCGACATCGCCCCCTCTTGGACGGACTGCTCCTGAACCTGCTGAGTCTCtgtccccccttctctctcactGCACCCCGTTTCTCTGTGCACGATTTTCTGCCGGCTTGGTCTCTCagacatgaaacaaacaaaaactgcNNNNNNNNNNNNNNNNcccccccccaaaaaaaaaaagtcagaatgGATTTAGTGAAACTCATGGGTAGAGAGAGTTCCTAACACACAGTTTTAGTCAATATTACAGAAATGCAGTGGAATGCAATGTCTAAACAAGTTGCCTGATGCAAACAACCTCACTGAATGGGTTAGACAACGTGACCCATGCATAACACAGAAGTAAACATTACGAAGACCATGCATTTCACAATACTCTCGCACTATCATGTGACAGTGATGGATCCTGCCAATCTGACTTATTAAAGCACAGGTAGCAAGTGCTGAACTACATGAGCAGAGTCCTGGCGTTACAGCTCCAGCACACAAAACGAACCACCACGACACACAGCTGATCATGTGCCTCTTCATCATTACGTGTCAGAAAACGGGCCTATTTAAAACAAGAGGGTCCGTTTACTAATAAAGTCCGTAGATCTACCGAGAAGCACAATAATCCCACTTGATATACCAGTATACACAAAGACTACAGTGAATCCAAGCATCAATGGGTGAATGCGATTTAAGTGCAGGTAACAGCTTCGGGTGCGATTTATACCGTCTGCTTGACTGTAAAAGGCCTTCAACTGGTATCTACGGAACGGTGTTGGACGAGTGCTGTGGAGAAGGGGAAGTGAGCTCAACTTCAAAACAGCGCAGAAAAACAAGCGCTTTTAATAGACGCTGACGTCTTCATACTTGCAGCTGCACAACGCGAACAAAGCAGGTGAAACAGACACATAAACATGGGCTTTAACAGCATATTGGTTGTGAGGctgtgaataaatacaaaatatagtcATCAGtgtttggtaaaaaaaaaacagcatcgTCTCACACAGctgatacaaacaaacaattctCCCCTACAGCGTTCCAAATGGAGCGCTGtgttcatacatacatacatacatacatacatacatacataaatggaCGCGGCTTGCCAACAGAACCGACCGGATAAAGAAACGCTACCGCGGTCCCCCACCTCTTTTGCTTATGTCTCCGTCGGTCCCATGTCTCGTCTCCCGACTGTCCTCCGCTGCGTCAGGCCCGAACCAGGAATCTGCCGTGCGCCACTCACGTGATTAATGCGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107051 lncRNA upstream 50237 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 57728 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 62374 16584317 ~ 16584765 (+) True G85760
TU107042 lncRNA upstream 74271 16572193 ~ 16572868 (+) True G85758
TU107041 lncRNA upstream 77489 16569447 ~ 16569650 (+) True G85757
TU107124 lncRNA downstream 157958 16807806 ~ 16809314 (+) True G85823
TU107184 lncRNA downstream 386724 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 436904 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 648311 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 809645 17459493 ~ 17459941 (+) True G85976
AMCG00021407 mRNA upstream 4652 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021403 mRNA upstream 67595 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021401 mRNA upstream 85363 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021399 mRNA upstream 91494 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021400 mRNA upstream 101640 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021408 mRNA downstream 3592 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021415 mRNA downstream 105085 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021416 mRNA downstream 128734 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021417 mRNA downstream 147810 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021419 mRNA downstream 182434 16832282 ~ 16833265 (+) True AMCG00021419
TU107049 other upstream 54166 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 573521 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4546432 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5659965 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7223720 9416267 ~ 9423419 (+) True G84425
TU107079 other downstream 6796 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 6796 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 348029 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1598642 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2629917 19279765 ~ 19282915 (+) False AMCG00021485

Expression Profile