RNA id: TU107079


Basic Information

Item Value
RNA id TU107079
length 5217
RNA type TUCP
GC content 0.42
exon number 2
gene id G85787
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16656644 ~ 16714038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATATATAAGGACTATCATTTATTTgccatattaaatatattatttatgataGTTACAATTTAGTAATACATGATGCAtggcagttttttgtttgttttttgtcacgAGTTAATGACACGCTTCGACAGAACGCTTAATgacatgaaaaattaaaaaaagaacaaacacaaagccaCAAATGACAATTAATACCAATAAAGTACATTGGTTTTGGAATGTATCAcacctttttttaaaaccagtccaacaaacaaacaaacaaacaaacacaaaagacaactcttaaaaaaaaaaaaggaaacagaacaGATGAACTGtgtatttgggaaaaaaaaactgttagcTACTGAGAAGGCAAGATAGCAGGCTTATGATAAAAAGGCAACAGTCTCTGAAGATCTACAGAAAGGACCCAGCATTGCCTGCACACAACCATGATGTAGTTTGCCGTTCTCAAAACGTCCAGCACAGGCCGAGAGACAGGCCTGTGGAACTCCCCCCTGCCCTGcgtgtgtggctgtgtgctgAAGGGGTCTCCCAGTTTCGCAAAGGTATTGCTCTGGCACGGGCTAGGAGGAAAAGTGCGTTGTGGCTGTGGCGATGGTGTTGCGGTGGGAAGAGGTGTATCCTGACTTGGAAGCTCAGGAGTATTACACAGATCCTGTCttccacaggaataacacatcaATACCTCATGCGCTTCCTGCATGTATAACAAGGTGATGGTCAGGGTTAGGGAATGGGAATGGGGTGACAGACGAGGTTCGGGGTTAGGGGCTTCTACATGTGATCCACAAAACATCAGAACTCGGTGGAAATGCATTTGGTCTTAGTGATGTTATTCCTGTgtaattcatacattaattaattacagattgGTGGCCatcattgtaaagtgttaccaattatGGATTAAAGATCTTTGTTAACATTCTCGTTAGCAGCTTGAATTATCTGTTGGaaagcagtgcattgtgggtggGCTTGAGCTCCATCATACCAAGGTGAGCCTGACCTTAAGGACCAGCTTAAACAGACAGTCACCCTAATCATGGAATGCTGCACAATCATCTTCCTTGAGCTACCAGTGTCGTGTGTCTAAGCAGTGCACGTGTGCGTGTTCCTGCTTCACATTCAATGAGTGAGACCAGTATGGATTTGTCAGCCTGCGTGTGCACATTCAATAGGTATACTTTTGCAACTccaagagtaaaaaaaaaaaaaaagtacaaagtaatataataatactaatcataatcatcatcatcatcatcataaaaatcataataaaagcttcatgtttgattttaaataacatatagAAAACTGCTGAAAATATATCTTTGGAATGATTCAATGTCGTCATTATCCAGCCGCACCAACCTCTGCAGTGTGGAATCAAACGGCAACGTGGCGTAAGAAAGCAGACGCATCACCAGACAAGGGCATGTAAACAGTGAGAATGCCATGAAGATAAAGTTAGTGCATTAAACAGTCTTTTTTTGTTGCCCTGACTAGTTTACTGGAACAAGCTCAAATCACAATTAATCAGCATGATTATAAAGCCACAGATTAGATTACAGATTACACACTCAGACCTCCTGTAAAAAGAATAACAGAACAGACTTCTTAATggcaaacataaatattaagAACAAAGTGACATTACTGAGTCCTACCATACAACAGGGGCCTGGGGGTtggctgtttatttaaaatgtgttttaaaaaaacaaactgaacaaaaacaaaaagacaaccagatattaaaatataagaattaaaaaggtttcaaTGTCTTGAAGGATAAAGTCATGTGCTTGCTCTCAATTTGAAAGGAGAAGATTTTTTAGGCGTCTCAAAAAAACTAACCAGGCCTTTTTACACACTCTCTCTTGTCTTGGCACCCGTTTCTctatgtctgtctctctttattCATTTGTCCTGTCTTGACAGTGGTTGAAGATTGATAATCCAATTACATAAATAAGGGTCCAAGATAAATTAGGGCTGGCACCAAACTCCCACTGGCATAAATACAGCGAACCactgacagaaacacagatCCAGCCCAGTACAGTGACAGGGGGGGCTGGGGGTACAGGACTGGAAGCCAGGCAGGTATTAAGTGCTGAGAAACTGACACTCACAACTTGGCAATTACAAATGTAAGGTGTTCCTGCAGCAAGATATAACTAGTGTGTGTGAAAAGAGCATTTTgggaaaattattttttccttcatgaataaataaaattgtaaaaccAGCTTGGGGGGGGGTGGTCTTGGGGTTGTGGGACAGTGAGTCATGCTCAATTTTGCACAAAAATCTTTGAAGTAACGTCTTGAAAGAGTGAGGCGTACAGAACGACAGACGCTGCTCAGGACCCTGTGCACATTTCTTTGGTTTAAATATTTCGGAGCGGGTTCTCTCGCTCACACTGTCAGCTTCATAAACAAGGGACTGACCTGCTGTTGGGCCCTGCCTGGAGAGCAGCCAATCGCAGTGTTTACCCACATGATATTGCACAGAAGGTGCCACTAGCAACACCCATGCCCCAGGGCAGGCACATGCCACATACACGCATTATTAGTGAACAGCAAAAGACCAAGATGACAAAACCCATAGAAACAGTTACTGCAAATGTGAACTATtctgaatataaaaatgaaaaaatacacaacttaTCCAACACAACTGCACATACTCCTGTGCACgggcacacacacaggcatgtgCGCACACACAATAACTGTCTAGaagtaacaaacaaaactgcagaaagTAAATTAACAAGTCTGAAGCCCATGAAATGAAGTTCACATGTTGCCTATCGAGCACCTGCACAGTGGGCAAGCACCGTTTAGGCTGAGGCCTTCAGGAACACAAAAAACCTGCCGTGGATTTGTATTTTAGAAgtcaaggaaaaacattttcacatccTGCAGGCTTCTGCACCAACTGCACTGAGGAACGAACAGAGCAAATTGACATTCAACATTGAGAAGCCTTATGGGGCTTGGATACGAGCGCCTGTGTAAAGCCCAAAACtgccaaacaaacacacatacacaccaacATATTGTGTTGCTCAGTTTGAGCCAaattgtgaaacatttataaGAAATGCATTCTGTCATATTTCgcatatgtgtttgtgtatacatctatatacattaatatatacacacatacacacactgacatctacatacatacatacatacatacatacatacatacatacaggcaATAGCAAAgcaaatactaaattaaaaaggtaaaatctACTTCTGTGGATGTTGATATATGTCAGGCAGTTAGTAGAACTGGATTCTGCACAGAGAGGTGGAGATCCTCAGGCAGATTCCTGTTTTCTCCTTAGAAATAGTACAACCACAGTGAAACTGTAGTGTTCTGGGTCTTTACAAGCACCTTAACACACCTTAAAAATGAATAGAGactaaccccccacccctccaacCTCCCATTCACAACATTCCTCTCAGAACATAAGAATCTCCTGTAGAAAAACTTTGGCACTGTCTAGTaaatatagataatatatattatagatagGAGATGTGTAATTCACAGACACCATGTCAGACcaagtacagtatataaagcTCTCAATTTGGAATGCctttccctcactatatattaaaaaaatatatatatatttatatatctatatctatatgcacacacacaaacacatttgtgcacatacatatatgtttaatttcatattatttgaCAGTAAGCTTTTTAgggagtgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgtttgtgtgtgagtgtgtgtgcgtgtgtgcgtgtagaGTGTTCTGGATCACACAGCCAGCCTGCCACACTGCCCTGCACACAGGCCAGCTGAGACCCACTCCAACACTGTGTTTCTAAGGCAGCTCAACACACCTCCCACAGAGCACAGAGAACACTCAAAATACCGCCACGATCGGTGCGACTGAGggaaggaatacaaaataaaacacaaaaataataattataattataataatacaaacaagtACCTTttgctattaaaaaatatgaaataatcttaataataataataataataataataataatattttaaaataataaaaacagaaagcgaACAGGTGAAGAGGCTCCTGTTTGGGATTCTATTACTGTGTTACTGTGGCTGTGCTGGAggctgagtgtctgtgtgtggcatGTAAACAAGCCAGGGCAGTTAGTGCAGGAGCTGACCTACTTGATGACAAAGTACTGGATGAGCACGGCAAAGAGGAAGGCCAACACGGCAAAGCCCAGCAGCAGGAGCAGAATTAAATGTTCATCCTTGCTGGAGCCTCCCCTGGCTGGGCCCTCCTGCCTGGCCATGGCTCCCGTGCCCCCCTCAGTGGGGCCCTGTGGCTCAGGGCTGGGCAGGGCAGTGCTGGGACTGTACTGTCCCCACAGCTCTTTCACACCACCCCCTCCTGCCCCGGTGCCCCCGCTGCCCTCTTGGCACTGCCGCCCTGCGCACACCCGCACTCGCCTCTCGCTTGTGGCCACTGCCCCACGCAGCACGAACCACGTCTCCTTGCCTCGGTACAActgtgtggggagagagagggagagaaggtaCAGTGGGAGAGAGGGCAGTAGGAGAGATGGTGgagaaaagagagggaggagagtgGGGACAGTGGgagacaggaggagagagatgACAGGGTTAGCATGGCGCCACACACACTTACTGTACCAGTCCTATTTAACAGAAGATAAATCAACAACACAACTCATCTCCAGAGATACGGCACAACCCTAGGGGTTTCTAGAGCTGCAGATGGCAAGAATATTGCTGCCTCTTTTCAGAAATTGCAAATCtagaaaagggaaaatgtttgaatggaagagagagattaaaataacacaatacaaCATTATCAtaagtcatatttattttaaacattgtttggGAAAATTAACTGGAAGAAGTAgtaaaaggaaatgaaaaaaaaaagcacagataGCATAGCCCATACCTGCTCAGACTCCCTGCCCCGCACCAACTGCAACGTGTACACAATGGGGTCTCCTCTCATTGGCTGCAGCCCCTCCCATGTGACTTCACACACATTCGGTTCCAGCTGTTGAATTTTGGGTGCTGCAGGGAAGGcaaaaaagtaataaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107071 lncRNA upstream 6796 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 59742 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 67233 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 71879 16584317 ~ 16584765 (+) True G85760
TU107042 lncRNA upstream 83776 16572193 ~ 16572868 (+) True G85758
TU107124 lncRNA downstream 145924 16807806 ~ 16809314 (+) True G85823
TU107184 lncRNA downstream 374690 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 424870 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 636277 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 797611 17459493 ~ 17459941 (+) True G85976
AMCG00021408 mRNA upstream 758 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021407 mRNA upstream 14157 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021403 mRNA upstream 77100 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021401 mRNA upstream 94868 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021399 mRNA upstream 100999 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021415 mRNA downstream 93051 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021416 mRNA downstream 116700 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021417 mRNA downstream 135776 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021419 mRNA downstream 170400 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021418 mRNA downstream 214116 16875998 ~ 16884879 (+) True AMCG00021418
TU107049 other upstream 63671 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 583026 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4555937 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5669470 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7233225 9416267 ~ 9423419 (+) True G84425
TU107177 other downstream 335995 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1586608 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2617883 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2837918 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3680728 20342610 ~ 20401249 (+) False G86601

Expression Profile