RNA id: TU107100


Basic Information

Item Value
RNA id TU107100
length 926
lncRNA type read_through
GC content 0.37
exon number 2
gene id G85802
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16691567 ~ 16757611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttttttaatttattgtttattttgtgttgtgtgtttaaaaaaaaaaatctccatcaACCTCCGAGTTAACATAAATATACCCGTACAGTCCGCACAGACTGATATCATCAGAGAAAACATCAATacgcattaaataaataaatacaagaatgtTATCACCCGTATTAAAactattatacaattaaattacactttcatatatttaatttgtcagTGTGCTTCACTCACCCCACCACTGACATAGCTCAAGTAAATTCCCAAAATAGATTAGTGCTACACCACATTCACAGCACAATACAGGATACTGTCAGTCATAGTATCCTAAAAGACTAGCAGACAGTAGAAACTGTATGTCACACACTCTCTGtattaaatacaacaacaaaaacaagctgACTAATGCGAACGTGGGGAGAGTCAGGGAGTGTGTTTCATCATACAGGAGATGGACACCCCCTAAGTATGACTCAGAAGCCAAACAAATGTGGCACAGACTTCatctgtttactgtttactgcATATAACACAGCCCATTGAGACCATTGTCTGTTggctcacactcacacacagacacagacacacacacacttactcacTCTATGACACGCAGGTCCCCCTCCCTCTGGGTGAACTGATGAGGAGAAATCCCTGGGTTGTGTAAGGCAGTGAAAGTGATCTCTAACCAGCACATCACATCACAAAAAACAGTTTATTGCTGTAAGTGTTATACAGCTTACTTTCCTTCCTGATTGAGTGTGTGGAGGGCAGTCAGCCAGACTTGTCAGGGGGACTTGCATTCTGGCTAACGTGCTTCAGTGTGGGGGAATGAAAATGACCCTTCAtgaatttgcattattattattattattattattattattattattattattattattattattattattattattattattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107056 lncRNA downstream 125546 16565717 ~ 16566021 (-) True G85771
TU106982 lncRNA downstream 219808 16471552 ~ 16471759 (-) True G85716
TU106916 lncRNA downstream 424769 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA downstream 424769 16266009 ~ 16266798 (-) False G85658
TU106817 lncRNA downstream 670825 16015533 ~ 16020742 (-) True G85580
TU107125 lncRNA upstream 50195 16807806 ~ 16809320 (-) True G85824
TU107139 lncRNA upstream 65205 16822816 ~ 16823079 (-) True G85837
TU107200 lncRNA upstream 312233 17069844 ~ 17071130 (-) True G85889
TU107215 lncRNA upstream 329111 17086722 ~ 17087718 (-) True G85904
TU107216 lncRNA upstream 330322 17087933 ~ 17088835 (-) True G85905
AMCG00021409 mRNA downstream 17391 16656644 ~ 16674176 (-) True AMCG00021409
AMCG00021412 mRNA downstream 41627 16647716 ~ 16649940 (-) False AMCG00021412
AMCG00021410 mRNA downstream 100958 16581562 ~ 16590609 (-) True AMCG00021410
AMCG00021411 mRNA downstream 119073 16567139 ~ 16572494 (-) True AMCG00021411
AMCG00021404 mRNA downstream 141473 16545753 ~ 16550094 (-) True AMCG00021404
AMCG00021420 mRNA upstream 85152 16842763 ~ 16850257 (-) True AMCG00021420
AMCG00021422 mRNA upstream 141765 16899376 ~ 16908983 (-) True AMCG00021422
AMCG00021428 mRNA upstream 236935 16994546 ~ 16995556 (-) True AMCG00021428
AMCG00021426 mRNA upstream 245758 17003369 ~ 17021275 (-) True AMCG00021426
AMCG00021427 mRNA upstream 264934 17022545 ~ 17023139 (-) True AMCG00021427
TU107075 other downstream 41742 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other downstream 41742 16647139 ~ 16649825 (-) True AMCG00021412
TU106928 other downstream 448912 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2639670 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2773699 13869939 ~ 13917868 (-) True G85037
TU107277 other upstream 541269 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 661993 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 789551 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 789551 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 1168488 17926099 ~ 17926708 (-) True G86049

Expression Profile