RNA id: TU107125


Basic Information

Item Value
RNA id TU107125
length 1515
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G85824
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16807806 ~ 16809320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctttcagatttttttattttatttttcttattgcaaACATTTAGTGTGTTAGGCAGCACATTTCTATATCAGCTTACATCAGCGACTTCAGTTACTGTGTCCAAGGGACAACAGAAGGGACAACAGAAAGCAGCTTATGAAAAGAGAACAATTCAGCCTGGACATAGTGTGGcccagagggagagagacaaaatatgcaaaagtacatgaaaaaacaaaaacattgaaatacatgaaaataaagttcaTGCTGATAGTTTAATTTCCAATTCAACTTCCTAAAATTTCTGGAAATGTAAGTAATGGCTTTAGATTCAGACATGTTTGGTGGTTTTGCTTATTGGGTAAAACCAACATTTTGATTGCAATCCTAAAGCAAATTCCACACATAAACAGTCAACAGGAATGCGTCACCCAACAATGAAACCAAATCTAAATACAGCAGTCATTGTTTATTCCCCATATTCTGAGGAACAGTGgctcagatttttttaaatagaaacaaatgaaacaaaaaaaagtagcTTGAAGTTCCACTCTGAACACAAATGTGTGAAGAGAAGTAGATGTTGAACTACAGGTCatagtgtgactgtgtgtgcgtctgcgATTGCAGTGGAAAGTATATGTCTCAGCGACACTGTGTGTGGGCATGTCGTGCATCTGCAGGATTTGTCCTTGCTTGGACTGtacttttgttcttgttttgctttttgctgaGGATCGAACAGCAGACTGAACAGAATCGCAAGTCGTTTGGGCTGAGCCAAGGGGATCAGTAGGGATACTCTGCAGTGTCAACCACACGGCCCCACAAGACACAGCTCAGCTTGTTCCATGTGAACTCTGACTTCACCTACCCTAACATGACTATTAATCGtaatattacataattaaatattaatatttcatagtcttaataaataaataaatacatctaagaGGTTCTGGATTGGGCCTCTTCGGTACACTCATGGCCCAACACAGTCTTTCAGGGCCAGTTAAATCTCACTATAGGATTTACCTACACAGTTGTGGAAAATTTGAGCATGTTGCAGCCAGCTGCATGTAAGATGATATATTACCTTTCCAATTAGCAGGGTAATAAAAGCAGACATCGTATTGTCAACATTTATGTTCTTTTTATGATCTCTAATGTTTAAAttagtataaaaatataattgtgtcatAAACCAAAGGACTTGAATAACACTTTTGTTCTTCTGCTTAAGGGTTTCTTAAGTAGGTCAAGCAAAGAGTATTTTGAAAGATTTTTCTAAGAAATCATGTGACACTACACTTTGACACTATTAAACTAAGGTGTACAGCTTCCCTGCATATGAGttaaaatttatatttaaattgatttggttGGTTGGGGGGTTTTGATCAAAAGTCAAAGAGTGATTAATTTCGGAGTGTGGCTATCTCCCTAACAGAAAGCCTAAGAACTAACAATATCATGTGCTTCCTTGTGTGATAACTGCAGAGTGAAGTCTTAGGCTCACATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107100 lncRNA downstream 50195 16691567 ~ 16757611 (-) True G85802
TU107056 lncRNA downstream 241785 16565717 ~ 16566021 (-) True G85771
TU106982 lncRNA downstream 336047 16471552 ~ 16471759 (-) True G85716
TU106916 lncRNA downstream 541008 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA downstream 541008 16266009 ~ 16266798 (-) False G85658
TU107139 lncRNA upstream 13496 16822816 ~ 16823079 (-) True G85837
TU107200 lncRNA upstream 260524 17069844 ~ 17071130 (-) True G85889
TU107215 lncRNA upstream 277402 17086722 ~ 17087718 (-) True G85904
TU107216 lncRNA upstream 278613 17087933 ~ 17088835 (-) True G85905
TU107220 lncRNA upstream 319144 17128464 ~ 17128665 (-) True G85909
AMCG00021414 mRNA downstream 74869 16720789 ~ 16732937 (-) True AMCG00021414
AMCG00021413 mRNA downstream 98366 16708394 ~ 16709440 (-) True AMCG00021413
AMCG00021409 mRNA downstream 133630 16656644 ~ 16674176 (-) True AMCG00021409
AMCG00021412 mRNA downstream 157866 16647716 ~ 16649940 (-) False AMCG00021412
AMCG00021410 mRNA downstream 217197 16581562 ~ 16590609 (-) True AMCG00021410
AMCG00021420 mRNA upstream 33443 16842763 ~ 16850257 (-) True AMCG00021420
AMCG00021422 mRNA upstream 90056 16899376 ~ 16908983 (-) True AMCG00021422
AMCG00021428 mRNA upstream 185226 16994546 ~ 16995556 (-) True AMCG00021428
AMCG00021426 mRNA upstream 194049 17003369 ~ 17021275 (-) True AMCG00021426
AMCG00021427 mRNA upstream 213225 17022545 ~ 17023139 (-) True AMCG00021427
TU107075 other downstream 157981 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other downstream 157981 16647139 ~ 16649825 (-) True AMCG00021412
TU106928 other downstream 565151 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2755909 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2889938 13869939 ~ 13917868 (-) True G85037
TU107277 other upstream 489560 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 610284 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 737842 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 737842 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 1116779 17926099 ~ 17926708 (-) True G86049

Expression Profile