RNA id: TU107216


Basic Information

Item Value
RNA id TU107216
length 882
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G85905
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17087933 ~ 17088835 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACATGgctaatatttaatgtaatatgtacagtacagtttctGAACAGCCTTCTTGAACTGTCACAGCTACTGATTAGAGCTCTATTTTGAGTATAAAGTACAGCTTTCTcctcagttttaattttaaagtacaTTACAGTGCCTAtgcttaatataaaaaatatccaatacattttaaatatatacagcatttgtttttctattgtgAGCTTGAGTTAGGGACAATCTATTTCTCCTCCAAGCAAGCAATTTTtagtagaaataataataataataataataataataataataataataataatataaaatcaccCAAATTAAACCTAAAGTGCATCAGGTAATATTTTCATAGCTTATCCGAAAGTGACTTTCTCAAGTACGTTTCATggggcaacagtttggggacttttacctttttttacatttacattttaaaaattaagaaaagccTTGGTTATCTCATCATAATTTATCTCAGGATCATGTTCTGACCAGCCATTGTCTGGTGATCATGAGAGAACACATATGAAATCCTGAAATCTTGTTATACCAAGATCTCCAAAAAACAGGTATGAAATCCCACGTATGAAAtcgttttgttttactttttatggcCCTTCACTCGTCTGTATCTTGTTTAAAGTCACTTTCATACAtagaacagacacacaaactgtattgtagagtatatatatatttaccaaaaACTCTCAACCGCATTCTTAAACAAGTAACACAAAAAGAACACGACAAACCAAATCCTCTCCCCGTTCTctatggggcgccaaatgtaaaacagcacaccttttttcaagtgtcttttttcacagatttaacttaaatattttttccagatttagtaaatacttaaatacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107215 lncRNA downstream 215 17086722 ~ 17087718 (-) True G85904
TU107200 lncRNA downstream 16803 17069844 ~ 17071130 (-) True G85889
TU107139 lncRNA downstream 264854 16822816 ~ 16823079 (-) True G85837
TU107125 lncRNA downstream 278613 16807806 ~ 16809320 (-) True G85824
TU107100 lncRNA downstream 330322 16691567 ~ 16757611 (-) True G85802
TU107220 lncRNA upstream 39629 17128464 ~ 17128665 (-) True G85909
TU107266 lncRNA upstream 160132 17248967 ~ 17290861 (-) True G85938
TU107288 lncRNA upstream 329162 17417997 ~ 17418548 (-) True G85952
TU107315 lncRNA upstream 370892 17459727 ~ 17459941 (-) True G85977
TU107323 lncRNA upstream 387869 17476704 ~ 17476904 (-) True G85985
AMCG00021425 mRNA downstream 45426 17035957 ~ 17042507 (-) True AMCG00021425
AMCG00021427 mRNA downstream 64794 17022545 ~ 17023139 (-) True AMCG00021427
AMCG00021426 mRNA downstream 66658 17003369 ~ 17021275 (-) True AMCG00021426
AMCG00021428 mRNA downstream 92377 16994546 ~ 16995556 (-) True AMCG00021428
AMCG00021422 mRNA downstream 178950 16899376 ~ 16908983 (-) True AMCG00021422
AMCG00021432 mRNA upstream 160797 17249632 ~ 17280801 (-) True AMCG00021432
AMCG00021435 mRNA upstream 197414 17286249 ~ 17299626 (-) True AMCG00021435
AMCG00021437 mRNA upstream 368025 17456860 ~ 17475633 (-) True AMCG00021437
AMCG00021446 mRNA upstream 423727 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021445 mRNA upstream 429546 17518381 ~ 17539713 (-) True AMCG00021445
TU107075 other downstream 438108 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other downstream 438108 16647139 ~ 16649825 (-) True AMCG00021412
TU106928 other downstream 845278 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 3036036 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 3170065 13869939 ~ 13917868 (-) True G85037
TU107277 other upstream 210045 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 330769 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 458327 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 458327 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 837264 17926099 ~ 17926708 (-) True G86049

Expression Profile