RNA id: TU107315


Basic Information

Item Value
RNA id TU107315
length 215
lncRNA type intronic
GC content 0.58
exon number 1
gene id G85977
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17459727 ~ 17459941 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCATCCACCGGCTGCAAGGTCTGCACAGCCGCGCAGCTGCTCAAGAGGGACTGCGCTGGAGCAGCCGCGGCTGCAAAACAATAACCGAGCGCTGTGTGACGAAGACGTGCATCAGCCAGAGCCAGAGACACTGCATGGAGCGCCACCTAGTCAGGAGGAGTGGATCGCCTCAAGGGCATGATCTTATGGATTTCATGGTACATATGGCAAAgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107288 lncRNA downstream 41179 17417997 ~ 17418548 (-) True G85952
TU107266 lncRNA downstream 168866 17248967 ~ 17290861 (-) True G85938
TU107220 lncRNA downstream 331062 17128464 ~ 17128665 (-) True G85909
TU107216 lncRNA downstream 370892 17087933 ~ 17088835 (-) True G85905
TU107215 lncRNA downstream 372009 17086722 ~ 17087718 (-) True G85904
TU107323 lncRNA upstream 16763 17476704 ~ 17476904 (-) True G85985
TU107339 lncRNA upstream 53256 17513197 ~ 17513620 (-) True G86000
TU107353 lncRNA upstream 66812 17526753 ~ 17527139 (-) True G86012
TU107354 lncRNA upstream 72667 17532608 ~ 17532829 (-) True G86013
TU107370 lncRNA upstream 121301 17581242 ~ 17585441 (-) True AMCG00021444
AMCG00021435 mRNA downstream 160101 17286249 ~ 17299626 (-) True AMCG00021435
AMCG00021432 mRNA downstream 178926 17249632 ~ 17280801 (-) True AMCG00021432
AMCG00021425 mRNA downstream 417220 17035957 ~ 17042507 (-) True AMCG00021425
AMCG00021427 mRNA downstream 436588 17022545 ~ 17023139 (-) True AMCG00021427
AMCG00021426 mRNA downstream 438452 17003369 ~ 17021275 (-) True AMCG00021426
AMCG00021446 mRNA upstream 52621 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021445 mRNA upstream 58440 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021444 mRNA upstream 121386 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021447 mRNA upstream 128597 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021448 mRNA upstream 156364 17616305 ~ 17632305 (-) True AMCG00021448
TU107289 other downstream 36309 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 156257 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 809902 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other downstream 809902 16647139 ~ 16649825 (-) True AMCG00021412
TU106928 other downstream 1217072 16241004 ~ 16242655 (-) False AMCG00021387
TU107350 other upstream 87221 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 87221 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 466158 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 787720 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1361592 18821533 ~ 18909908 (-) True G86241

Expression Profile