RNA id: TU107362


Basic Information

Item Value
RNA id TU107362
length 2328
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G86018
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17581307 ~ 17585472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAAAGAAACACAGCAGCttaaattttaaaacattttgattttattttataccaaaaaaaaaactctttaaagtataacaaaaaaaaaaaaaatttaacgGCACCAGATACAGAAGTCGCATTACGTGGAATTCAGAGCGAGCTGATGCGGTCTGGGTGATATTCTCACACAAGCACTGCAAATCCTCCCCGTTGCCGTCAGGCCCCTCCCTCCATTCTTCCTCAtctctttcttcctccctcACCCTCTTTCAAGAATTCATCACAAAGCAGTAATTGGTTTATACAGTGGCATACTTTTATGGCTTTAGACTGTGCCCCTAACACCCCAACTACAAACCTCAGTATTTCCACACACCCTCCCCCTCCCCGACGTGCCCCGGTGTCTGGATGCCATTAAAGTGAACATGTTGAGATGGAATACAGAAGCAAAGTGACAGACAGAAGAAGTGTCCCAGCGAAGGAGTGTGAGCAGGCACTGTTCACTTGGATCCCTCCGCACAGCACTGCTTCTTCTCCTGCTCAATACTTCCTTGGTGGGCAGCGGGTTCTTCTCCTTAGTGTTGGCCTTCTTTAGACACTTCTTGTCAAAGTTCTGCACTTCCTCATTCACAGGGTTGTTATCACTCATGTTGGCAGATGTCTGTCAgaacagagaaagagggaaagaggaaTGAGaggatacatacatacataacatacttttatttgttctgcagtttttttttttttttttttttttttaaagagcaaatCTAATCTGATTGAAACCCAAAGTGTTCAACAATTCTCCCACCCTTAACCACAGTTGCCAACATGCCTCCTGTCAGACTGGAGAGCATTCTTATTTCAGGAACATGGAGCTGTGGGGTTCTGGCTCGTCTCAGTGCACAGGGTTCCAACCCGTGCGGTCCCTGGATCAGGTGCACCTGGCTGGAGGACTGAGAACCACAAGAACAGCTGGCAGAGAGTAGCAATCTCTCCTGCCCCACCCAGCCCTGCCTTTTTGGCAAACACACACCTGCTTCAAGGTGAACTTTAATCTGATGCAAAGAAACAGAAGTCCCACCTCCAAGCTGTTATTTTgtgaagggattttttttttttttttatatataatggcAAGAGTGTGAGGTCACCGTTTTAAGGAGTGGAGCTCTTAGCTGCTCTCCCAGGCCTCTCTTACAGACACGcctaaattacacattttcacactTCCCCCCCCAACAAGGCTGTGCAGCCCCTTATTGCACCAGCCTTATTACACCACCTTGTACAGAGTATTCTTCCACTGTTGCCCTGGATGTGATAAGGGCGGGTACCCCAGTAAACCTGGTGCGAAGGAACGGTTCTGGTAAATACACAGGGAAGGGGCAGTGAGGTCCTGGGCATGCACCAAGAGGTGTGCTGGACTCAGCGGTGGACAGCGGGGAAAGCCTTGGCACCGCAAAGCACAGTGAACTAAAAAACTATCCCAAATGCAAGAAGGGGTGAACATTCCCGATGCTAACAGACTGTGCTGGACGTTCAGCGAGCCAGTTAGCTCAGCTCTACAGTGCTTAGCCTGTAGAGCCTGCTTAGCCTGCTTGCTTCACCCGTGTTCCTGTCCACCCCCTGTTCCCGCCTGCTCCCTGCACTAAGTCTCGCACAGCCCTGCTCCCATGCTTGTCACAGGCAGGAAATATCAAGCCCCTGGTGGTGGAGGAGTAGTGCAAGAGCCTGCAACTGGCAAGATCTAANNNNNNNNNNCCCCCCCCCCATCGACCCTACCTCTTCTGCAATCTGCAATTCCAACAGAGGAGGCTGACAGATGAATGGTAATGATAATACAAACTCAAATGCAAGATTTTTTTATGCAAGGAAGTCAATATAAATAGATTCCACAATGACGTGTTGGTACAGTCCCGATAGCTCTACATGACTTTCCAGTGCAAACAACCCCCGACTACAGTTATGAGTCACCCGGCCACAAGGCCAGGGATACACAGTGCAGATCACAGTGATTTACGCCAGATCGGTGGCTTCAGTCGGCACGCCAGTAACACTAATCCTTCATCTCGAGgtccttcttctccttcactGCACACAggataaaaataactgaaaaaataaccaacaaaatcaaaaactcGTATTCAATTGAAAACGGTTCCAATCATGCAAGCGGAGGTTGTTtaacacaaattacacaatcaCTCGGACAggctccaaaaaaaaaaagaatgcattaTAATATCCAAGAGAAGCGAGTCTCTGCAGCAGGCCGCAGTAGCTGGGCCGGGCTGGGCCGGGCTGGGCCGGGCTGCAGAGTGCGACCCGTCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107347 lncRNA upstream 48487 17532619 ~ 17532820 (+) True G86007
TU107346 lncRNA upstream 54181 17526726 ~ 17527126 (+) True G86006
TU107338 lncRNA upstream 67686 17513128 ~ 17513621 (+) True G85999
TU107332 lncRNA upstream 72012 17509085 ~ 17509295 (+) True G85993
TU107331 lncRNA upstream 72224 17507526 ~ 17509083 (+) True G85992
TU107364 lncRNA downstream 29901 17614614 ~ 17616453 (+) True G86020
TU107381 lncRNA downstream 63561 17648274 ~ 17648531 (+) True G86034
TU107502 lncRNA downstream 638122 18222835 ~ 18226242 (+) True G86117
TU107503 lncRNA downstream 644752 18229465 ~ 18229666 (+) True G86118
TU107605 lncRNA downstream 964715 18549428 ~ 18549759 (+) True G86202
AMCG00021440 mRNA upstream 74177 17494793 ~ 17507130 (+) True AMCG00021440
AMCG00021439 mRNA upstream 88648 17483091 ~ 17492659 (+) True AMCG00021439
AMCG00021441 mRNA upstream 109573 17470366 ~ 17471734 (+) False AMCG00021441
AMCG00021442 mRNA upstream 144709 17430466 ~ 17436598 (+) True AMCG00021442
AMCG00021443 mRNA upstream 153104 17427517 ~ 17428203 (+) True AMCG00021443
AMCG00021451 mRNA downstream 448478 18033191 ~ 18050404 (+) True AMCG00021451
AMCG00021450 mRNA downstream 476908 18061621 ~ 18067774 (+) True AMCG00021450
AMCG00021453 mRNA downstream 524365 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021454 mRNA downstream 583134 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021455 mRNA downstream 592467 18177180 ~ 18188162 (+) True AMCG00021455
TU107177 other upstream 577176 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 867269 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 919425 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 988334 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 1507689 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 663777 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 1695052 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 1915087 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 2757897 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 2793710 20378423 ~ 20380424 (+) True G86616

Expression Profile