RNA id: TU107364


Basic Information

Item Value
RNA id TU107364
length 1812
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G86020
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17614614 ~ 17616453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCAAGCTGCTGTGTAAAAACTCAGAACACCACTCTGAAACCAGAGATGACTTTATTATTCCATTTAACAGATGCAGTACATTCTGAATGTCctgcacaaacaaacagaaaggaaggcggacagacagacaaagcGATGAGGTTTGTCCCTCACTGAACGTGGACAGACTGTCAAGTTTGCAAatgtggcaaaaaaaaaagcaggggGACGGGGTGTCTTCAAAATTTTTTACAGGTTTTGCACTGTGTTCTGTAAGGCACCAGGCGTCCTCATGTCAATGGCAGCCCTCTTCCACTTTGAACAGGAAAGCACTGTGTAATTGTGAGCATACACAAAGTCAAACACTAAATCACACAATACACatagaaaaattataaaatcaaaattcCAGAGTATTGCAGCTGCCATCTGTAATATTGCTCACATCGGCTCTTTCAACTACTGTCTTGAAGCCATGCCTTCTTTGCAGAAGATCACTTCCAAGGAGGACAGGAAAGCTATTCTGCAACCAGCAATGGAGTACAGGAAAAAGCACTTTGCAGAATACAGTACAGCAGTGGAAGTGCATCAGCAGCTTTGTGGTTCAAGGAGCCCTTGTCTCAGGCTGACCAGTACCCTTCAGCTTCCAAATGGATCAGAgctcttgcatttatttttaataaatagaggggaaaaacaaaccTCAACTAATTGCACACTTGTTCTACTCGTGCACTCACTATAAATACAGTTGCTGTAAAATCTGCACTGGTGGAGCCGGCTAGCCACAAGGCGTCAGGCAAGAGGAAAGGACAGGGCATGGTATGGCCTCCAGTCAGGGTAAGGAAGAAGCAGAATgaacacatgcacgcacacacacactaaattaaAGCGGGAATGCCAGCACATGTATGtggctttattaaaaaacaaaaacaaatgaggaaAAGGAACAAACTAAAAAACCTTTAAAAGTCCACTGCTGGATTTCTTTCACTGTCATCGTTTAAAACACAGTgaaggaggggagaaaaaaaaaaaaaaaaatgtagctgaCCCGTGTTTGAGGAAGCTCCagcctgcaggatttccagaaGCAAAACAACTCCCCACCAACCCCCACCCCAATCTCTTACTGCTTTGCTGTGTACTGGAGCTTGCTCTCACCCAACGGTCTGTCTGTAGTTGCTCCTCTATGGGAGGAAAATACAAGCACAGATAGCTGAGCAACTCCCTCAATGTAGACATATCAGCTGTAAGTGTAACAGGAACGGCAAACAGGACAGTAGAGGCAGCAGCAGAACACAGAAGGAGGGGAATCTCTGGGAGAGCAACTCGCTGCACAGGGATGGTTTGAGAggggtttgtttgttcattctcTCGCTCATATTACCAGCCCCGCTAAACCATCTTGATGAGGGGGAATGGCCTGAACCTCTGCCCCTGGGACCAGTCTCTTCACTGTCCCTCCCAACAAGTCGGTCAATGATTCTGGTTTGGGATGGGGCGAGGGCATGAGAGGCCACAGGGGTGGTTTGGCAGGACAGGTGGAGAGTGGTGGCAAAAACTGTGGTGGAGTTTTCAGTATATTCCCTTCTATTCCGTTTTGGTAAAAGCTGGTGTCCCAAAGCACCAGACCTCTATGGGATGAGGGAAGgaaagaaggagggagggatggagtgTTACAAAGGAACGTGGCTGAAGAGGTAGGAGACTGACTCTCCGTTGTGTGTCCTGCGGATGGCTTCTGCCAGGATCATGGAGATGTCAATAACCTGTAGGAATAGAGCGCACACAATGAGTTTTCCTATCCCACTCTTCATACTGACAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107359 lncRNA upstream 29142 17581307 ~ 17585472 (+) False G86018
TU107362 lncRNA upstream 29901 17581307 ~ 17584713 (+) True G86018
TU107347 lncRNA upstream 81794 17532619 ~ 17532820 (+) True G86007
TU107346 lncRNA upstream 87488 17526726 ~ 17527126 (+) True G86006
TU107338 lncRNA upstream 100993 17513128 ~ 17513621 (+) True G85999
TU107381 lncRNA downstream 31821 17648274 ~ 17648531 (+) True G86034
TU107502 lncRNA downstream 606382 18222835 ~ 18226242 (+) True G86117
TU107503 lncRNA downstream 613012 18229465 ~ 18229666 (+) True G86118
TU107605 lncRNA downstream 932975 18549428 ~ 18549759 (+) True G86202
TU107625 lncRNA downstream 998717 18615170 ~ 18618556 (+) True G86217
AMCG00021440 mRNA upstream 107484 17494793 ~ 17507130 (+) True AMCG00021440
AMCG00021439 mRNA upstream 121955 17483091 ~ 17492659 (+) True AMCG00021439
AMCG00021441 mRNA upstream 142880 17470366 ~ 17471734 (+) False AMCG00021441
AMCG00021442 mRNA upstream 178016 17430466 ~ 17436598 (+) True AMCG00021442
AMCG00021443 mRNA upstream 186411 17427517 ~ 17428203 (+) True AMCG00021443
AMCG00021451 mRNA downstream 416738 18033191 ~ 18050404 (+) True AMCG00021451
AMCG00021450 mRNA downstream 445168 18061621 ~ 18067774 (+) True AMCG00021450
AMCG00021453 mRNA downstream 492625 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021454 mRNA downstream 551394 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021455 mRNA downstream 560727 18177180 ~ 18188162 (+) True AMCG00021455
TU107177 other upstream 610483 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 900576 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 952732 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 1021641 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 1540996 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 632037 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 1663312 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 1883347 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 2726157 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 2761970 20378423 ~ 20380424 (+) True G86616

Expression Profile