RNA id: TU107375


Basic Information

Item Value
RNA id TU107375
length 232
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G86029
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17633755 ~ 17633986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGCCTCGCTATCACATCCTGGTTGTTGCTGATGCTGTTCTTCCGGTTAAGTTTCCTCTTCAGCGGGAGTTGTGGCTGGGCTGCGCACTCTGGCTCTGTGTACCCTCCCTCTTGCTGGACCTCCTTGCTGTTGCTGTCTCGCTGCTCCACATCACAGCCATGCTGCATCCTGTCTCAATGCAATTATCATCTAAGCACGCCATTAGTCCCATACATCATTGCTTGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107370 lncRNA downstream 48314 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 48314 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 100926 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 106616 17526753 ~ 17527139 (-) True G86012
TU107339 lncRNA downstream 120135 17513197 ~ 17513620 (-) True G86000
TU107551 lncRNA upstream 689505 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 915458 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 958654 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 988577 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 1025312 18659298 ~ 18663129 (-) True G86240
AMCG00021448 mRNA downstream 1450 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021447 mRNA downstream 44294 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021444 mRNA downstream 48356 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021445 mRNA downstream 94042 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021446 mRNA downstream 116088 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021449 mRNA upstream 4414 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021452 mRNA upstream 418006 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021458 mRNA upstream 463906 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021457 mRNA upstream 475632 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021456 mRNA upstream 519019 18153005 ~ 18165667 (-) True AMCG00021456
TU107350 other downstream 80989 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 81491 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 210337 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 330285 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 983930 16647139 ~ 16649825 (-) False AMCG00021412
TU107397 other upstream 292113 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 613675 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1187547 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1626959 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1641368 19275354 ~ 19278023 (-) True G86327

Expression Profile