RNA id: TU107397


Basic Information

Item Value
RNA id TU107397
length 578
RNA type TUCP
GC content 0.42
exon number 2
gene id G86049
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17926099 ~ 17926708 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaacaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcagtcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagtgacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatatcagggacaagattgtagacctacacaaggctggaatggatgacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaataaacacaaaataactgtcagtctccctcggtctggggctccatgcaaggtctcacctcgtggagtttcaatgatcatgagaacagTAGGAATCAGCACAGACCTAcatgggaggatcttgttaatgatctcaaggcagctgggaccatagt

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 292113 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 340658 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 340658 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 393270 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 398960 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 396783 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 622736 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 665932 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 695855 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 732590 18659298 ~ 18663129 (-) True G86240
AMCG00021449 mRNA downstream 242991 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021448 mRNA downstream 293794 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021447 mRNA downstream 336638 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021444 mRNA downstream 340700 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021445 mRNA downstream 386386 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021452 mRNA upstream 125284 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021458 mRNA upstream 171184 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021457 mRNA upstream 182910 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021456 mRNA upstream 226297 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021459 mRNA upstream 269429 18196137 ~ 18226215 (-) True AMCG00021459
TU107350 other downstream 373333 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 373835 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 502681 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 622629 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 1276274 16647139 ~ 16649825 (-) False AMCG00021412
TU107532 other upstream 320953 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 894825 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1334237 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1348646 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1539352 19466060 ~ 19468733 (-) False AMCG00021495

Expression Profile