RNA id: TU107551


Basic Information

Item Value
RNA id TU107551
length 535
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G86154
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18323491 ~ 18324025 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaccttgaactcatgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcagctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctattTGAgtggccagccttcgctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcgccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaattcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccatccactgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 689505 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 738050 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 738050 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 790662 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 796352 17526753 ~ 17527139 (-) True G86012
TU107606 lncRNA upstream 225419 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 268615 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 298538 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 335273 18659298 ~ 18663129 (-) True G86240
TU107657 lncRNA upstream 426647 18750672 ~ 18811147 (-) True G86244
AMCG00021462 mRNA downstream 43706 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 74649 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021461 mRNA downstream 82912 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021459 mRNA downstream 97276 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021456 mRNA downstream 157824 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021464 mRNA upstream 153047 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021468 mRNA upstream 242079 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021469 mRNA upstream 271117 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021467 mRNA upstream 339198 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021471 mRNA upstream 438903 18762928 ~ 18772587 (-) True AMCG00021471
TU107532 other downstream 74597 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 396783 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 770725 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 771227 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 900073 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 497508 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 936920 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 951329 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1142035 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 2005397 20329422 ~ 20335304 (-) True G86600

Expression Profile