RNA id: TU107605



Basic Information


Item Value
RNA id TU107605
length 332
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G86202
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18549428 ~ 18549759 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccccactcttccttaccttctgctgacctccccatctcaatccccttggaatccaccacactctctccttcttcttccactaaaaatctaggagtcaccctcgatcctgcgctctcctactcccagcacatcaccacgctgacgcgcacctgcagattcttcctgagcaacatacgccggatccgtccctttctcaccgactactcaactcagctactcatccagtcactggtcctctcccgcctggactactgaaactccctcctggccggcctgcctgcatccactacccgcccactccagctcatccagaactctgcggctcgtctggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107503 lncRNA upstream 319762 18229465 ~ 18229666 (+) True G86118
TU107502 lncRNA upstream 323186 18222835 ~ 18226242 (+) True G86117
TU107381 lncRNA upstream 900897 17648274 ~ 17648531 (+) True G86034
TU107364 lncRNA upstream 932975 17614614 ~ 17616453 (+) True G86020
TU107359 lncRNA upstream 963956 17581307 ~ 17585472 (+) False G86018
TU107625 lncRNA downstream 65411 18615170 ~ 18618556 (+) True G86217
TU107639 lncRNA downstream 113434 18663193 ~ 18664533 (+) True G86227
TU107641 lncRNA downstream 129354 18679113 ~ 18679876 (+) True G86229
TU107691 lncRNA downstream 497290 19047049 ~ 19055103 (+) False AMCG00021472
TU107705 lncRNA downstream 603256 19153015 ~ 19153282 (+) True G86284
AMCG00021465 mRNA upstream 9280 18488903 ~ 18540148 (+) True AMCG00021465
AMCG00021463 mRNA upstream 161905 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021455 mRNA upstream 361266 18177180 ~ 18188162 (+) True AMCG00021455
AMCG00021454 mRNA upstream 378884 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021453 mRNA upstream 437207 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021466 mRNA downstream 6033 18555792 ~ 18556400 (+) True AMCG00021466
AMCG00021473 mRNA downstream 481532 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021472 mRNA downstream 497412 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021475 mRNA downstream 558018 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021480 mRNA downstream 614919 19164678 ~ 19180521 (+) True AMCG00021480
TU107506 other upstream 299742 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 1545297 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 1835390 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 1887546 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 1956455 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 730006 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 950041 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1792851 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1828664 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1849167 20398926 ~ 20401249 (+) True G86601

Expression Profile