RNA id: TU107606


Basic Information

Item Value
RNA id TU107606
length 314
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G86203
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18549444 ~ 18549757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagacgagccgcagagttctggatgagctggagtgggcgggtagtggatgcaggcaggccggccaggagggagtttcagtagtccaggcgggagaggaccagtgactggatgagtagctgagttgagtagtcggtgagaaagggacggatccggcgtatgttgctcaggaagaatctgcaggtgcgcgtcagcgtggtgatgtgctgggagtaggagagcgcaggatcgagggtgactcctagatttttagtggaagaagaaggagagagtgtggtggattccaaggggattgagatggggaggtcagcagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107551 lncRNA downstream 225419 18323491 ~ 18324025 (-) True G86154
TU107375 lncRNA downstream 915458 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 964003 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 964003 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 1016615 17532608 ~ 17532829 (-) True G86013
TU107634 lncRNA upstream 42883 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 72806 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 109541 18659298 ~ 18663129 (-) True G86240
TU107657 lncRNA upstream 200915 18750672 ~ 18811147 (-) True G86244
TU107662 lncRNA upstream 368497 18918254 ~ 18918531 (-) True G86249
AMCG00021464 mRNA downstream 71500 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 269659 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 300602 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021461 mRNA downstream 308865 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021459 mRNA downstream 323229 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021468 mRNA upstream 16347 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021469 mRNA upstream 45385 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021467 mRNA upstream 113466 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021471 mRNA upstream 213171 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021470 mRNA upstream 248161 18797918 ~ 18809251 (-) True AMCG00021470
TU107532 other downstream 300550 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 622736 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 996678 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 997180 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1126026 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 271776 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 711188 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 725597 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 916303 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1779665 20329422 ~ 20335304 (-) True G86600

Expression Profile