RNA id: TU107637


Basic Information

Item Value
RNA id TU107637
length 727
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G86225
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18622563 ~ 18623590 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTGCTCCCAATCGTGGAGAGGGGAGTAATGTCACAGTTCACAACACATCCCCAGTtctccactagatgtcgccatcacccttcttttccagtcacctctcccagctcccttcattaaatcattcaatcaacattcctgaaacccatgtgcacttctGCAATCACCCTCTTCTCCCATTCACCCAGCACCTCCCAACCTGGTTTTCTGTTCtatttataaacccctcactaactCCCAGcctttgcaaagttttgtcagtgttcaCTACAATCCAGAGCAGTCTCCCAGTGCCTAGTCGAATCCTCGAATCCTCTTGTTTGACTTCCTGACCACGACTTTGAACTTCCCCTGATTGCCTGATCGCCAGACCCTTGCCTTTATTCTTCCAATTGATGATATAATTGTTCTCTACCTCTTTTGTCTTGCAGCATATATTGATATTCAATTTGTCATTCTTAAAAACAATTGGAGGATCTGGAGCAGAATCAAGGAATCATTATGAGGGATCAAATCCTAATAAAAATATTGAGGAGGATGAACACAACCAGTTGGTTGATATGAAACATGACAAAGTAGAGGAGTTTGAGGAATTTTCAAATCTGTGAAGCATTTTCATGAGGTGGAGATTAAAGTAAAACATGGAAAACTCAACAAAAGACTACAGTAGAATTCTAAGTGcttcatcaaataaataaacagatcactaataaatacatttctgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107606 lncRNA downstream 72806 18549444 ~ 18549757 (-) True G86203
TU107551 lncRNA downstream 298538 18323491 ~ 18324025 (-) True G86154
TU107375 lncRNA downstream 988577 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 1037122 17581242 ~ 17585441 (-) True AMCG00021444
TU107652 lncRNA upstream 35708 18659298 ~ 18663129 (-) True G86240
TU107657 lncRNA upstream 127082 18750672 ~ 18811147 (-) True G86244
TU107662 lncRNA upstream 294664 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 382026 19005616 ~ 19006432 (-) True G86253
TU107706 lncRNA upstream 529415 19153005 ~ 19153285 (-) True G86285
AMCG00021469 mRNA downstream 14410 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021468 mRNA downstream 47129 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021464 mRNA downstream 144619 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 342778 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 373721 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021467 mRNA upstream 39633 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021471 mRNA upstream 139338 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021470 mRNA upstream 174328 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021474 mRNA upstream 369134 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 435294 19058884 ~ 19073801 (-) True AMCG00021476
TU107532 other downstream 373669 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 695855 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1069797 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1070299 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1199145 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 197943 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 637355 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 651764 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 842470 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1705832 20329422 ~ 20335304 (-) True G86600

Expression Profile