RNA id: TU107639


Basic Information

Item Value
RNA id TU107639
length 1341
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G86227
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18663193 ~ 18664533 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagctcTTTCCCTTCATCTGGGGGTTAAAGCTATACACGCGTGGTGGAGTGTGAGTGGGGCAGGCCTGTACTGTTGAAGCCGGCAGTGAAGGTGTTGTATGGATGCAGGTTTTGCATTCCCACCAGCGAGTTGGGGATCATGGTGATGGTATTGGGCGTCATGAGCGGGATGTCATCAGGTGAGCGGcgcagtgtgagtgtgtagtcAGGAAGCGAGGCCAGGCGCAGGGGGTCGTGAGGGGGCACACTTTCGCACTCGTGGTGTGTCTGGTTCATCTGCAGGGACATGATCTCCTCCTCGGGAGCGTGGGCCAGGTCGTTGGTATTGGCGCTGCGCTGGGGGCTGGGCTGCCGGTGTGAGTCCTGCCGGCGCTTGTCCTTGCGGTAGTATAGCGCAGCAAAGGCCAGTACGTTGAGGAACAACAACGAGGCACCCACCGCAATGGTCACGCTCAACTCCGTGGAATAATCGCGGGGGTTCTCAACCAGCAGTGGCCCGCTCTCCTCCTCGCCATTCCACTTCTCCTTGCTGTTCTCATTGTTGTAGGCTGGGGACATGGGCGGCCGTTTGGTGTTGAAGGGCCAGTTCTTGCCGTTGGGCCGCTTGGTTGCGAAGGAATTCTGCGTGGTCTCGGGTGGGGGCACcttggtggtggtggaggtgtAGTGGAACATGTCATGCAGATTATATAGGTGCGGCACCAGGTGCTTCCAGAAGGCCACCTTGGTGGCACGGTAGTGGTCACGAACGCGCGGCTTCAGCCCAATGTGGAGGTAGAGTTGGTCCTGCGGGTTGTATTTGGACCAGGCCACCTCCTCAAAGCGGTTGGCCTTGGTGTGGATGAACTTGGTGTCCTGGGGAACTGGCTTATTGGGGTCCCTGGGAACAGAGACCAGAGCAAGGCAGTCAGTAAATCTGTATACAACACTCatgcacatgcatgcacacactcacacacaaatgcacGTACCCAGAGGAAACATGAGAGAACCTTAACATCCTcggcttcttcttcttctctgtaCCCTGAGCTCATGATCAGGATGACTAATCAAACCCTGTAATTGAACTCTTCCCTGCTCTTAAGATAATTGGGTTTCAGATTTTCGCCATTCAGATGAGCTATTTCAAAAATGTACCTTGCTTATTATGGGAgtgtttaatacaatataattactATCTGTGTTTGTCCACCAATTAATGATAACAACAAAGCCTAAACAACattggaatatttttttaaaacaagaactgaaaacagaaaaaagctaattacaaaaatagtttaattaagggCTCGATAATTCTACGCAATTAAGATTTAAGAAGACCAAAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107625 lncRNA upstream 44637 18615170 ~ 18618556 (+) True G86217
TU107605 lncRNA upstream 113434 18549428 ~ 18549759 (+) True G86202
TU107503 lncRNA upstream 433527 18229465 ~ 18229666 (+) True G86118
TU107502 lncRNA upstream 436951 18222835 ~ 18226242 (+) True G86117
TU107381 lncRNA upstream 1014662 17648274 ~ 17648531 (+) True G86034
TU107641 lncRNA downstream 14580 18679113 ~ 18679876 (+) True G86229
TU107691 lncRNA downstream 382516 19047049 ~ 19055103 (+) False AMCG00021472
TU107705 lncRNA downstream 488482 19153015 ~ 19153282 (+) True G86284
TU107735 lncRNA downstream 559920 19224453 ~ 19226768 (+) True G86309
TU107751 lncRNA downstream 593925 19258458 ~ 19258855 (+) True G86323
AMCG00021466 mRNA upstream 106793 18555792 ~ 18556400 (+) True AMCG00021466
AMCG00021465 mRNA upstream 123045 18488903 ~ 18540148 (+) True AMCG00021465
AMCG00021463 mRNA upstream 275670 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021455 mRNA upstream 475031 18177180 ~ 18188162 (+) True AMCG00021455
AMCG00021454 mRNA upstream 492649 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021473 mRNA downstream 366758 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021472 mRNA downstream 382638 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021475 mRNA downstream 443244 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021480 mRNA downstream 500145 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021478 mRNA downstream 538345 19202878 ~ 19220274 (+) True AMCG00021478
TU107506 other upstream 413507 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 1659062 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 1949155 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2001311 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 2070220 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 615232 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 835267 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1678077 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1713890 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1734393 20398926 ~ 20401249 (+) True G86601

Expression Profile