RNA id: TU107652


Basic Information

Item Value
RNA id TU107652
length 3832
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G86240
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18659298 ~ 18663129 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaagaaaaaaaatatataaaaatgactcTTTAAGGAGAACACGCGTTGTTTTAATCTATGAAGAGACCGTGAAGCTCTTTGTACTTCTTCTGTTGGTCCTGTGGTGTGGAACTGCCAAAACACAACATATTTCCCTCCTTCCATGGGGGGGCCCTGCAACAACACgcttttctaattaaaaaaaaaaaagaaagcctttTAAGCAGActggaaaataagaaattaacaatttgttttaaaataaacaaaaaagtgctttttatttcccatttctGTCTCTTGTGGGAAATTAGTTTTACAACAATGGCCTCTGCTGAGAcatctacagtttatttttgtttgtttttcagttttgttagttttttctttacaatgccttacaaatgtgttctttattttttctttttaatttatttttcttgtttacttcTTTTCAACCTGCAACATTATTTTCATGTGGCGCTTTGAGGAGAATGCCAAATTTCAGAAgtaaaaaattgaaattattcagtgaaaagaacaaaatcatGGCAAACTACCATTTGTCCATTGCCtatctttataaaacaaacacaaaatgtttttattgttttgtttgatttagtttttttctttgtttttcaattacaatataaatgattTGTGTCTTCTGAAATAGACTCtgcaggagaaaaaagaaaaaagagaagcaGAGACAAATGTACTACTTTACTGTGATTGTTTTGTTAAGAAAAAAGTGCATCTTTTGCTACAAattatctatcaatctatctactGTATCTCTCCATGAACCTGCACACTTACACACAGGGCTCCctgcgtgggtgtgtgtgtgtgcgtatgtgtgtgcgCCAGTCTTTGGGTTAGTAGAACATTGTCTGTGGAAAGGCCTCTTACTATCAGCTGTTGAGTTTCCTCACCACACATAGTATATCCGCCACGTCAATGGTTGTCTGTCTTTGCGGAATAGcacttttgttctttttaaaattatttacatctaatttttcttcaaaaacatataaaaaaaatgaatctattattttacaatgtaaggAAAAACTAGCTGAGGATTCAACTGAACTAACTGACAATTCCATGTAAGaaagattattataatttttttttttttttaagaaaagttCCAGTAAGCAGAGACAAAGTGGTCTGAACGCGCTGACAAGGGCCCTATGCAAATCAAGGCCAgcgcacatttttatttataaatatatataaatatcgacatatataaatatatatagggcTGCCATAAGGACGTCTCTGTCATTGACTACAGTCTGCAAACAGTCCCCTCTGTAAACATTCTGGAGCAGCTCATTCTGCACACGATAGTAGGCCTTGGACTGACGTGTTTATAAGAGctctatatgtatgtatatatatatatatttaatatttatatatatatgagtatgAGATGTACACCTGCTGATTGTGCCATGTGCCAAATTAGAACCAGcaaacttgagaaaaaaagtatttttttttgtgtgtaaatttgttctgtattttgatAAACATTCTGTttacttgtgtttattttctgttaatatCAGTTTGTAGTTTGATGTCAACCATGAGGGGTGAAGTCCCAGTGCAACTAGTCGAGACATTCTGTCCCACTACTCTCACTGACCCACATGGGCCCCTGATAGCATTTCTGAGAATGCCTCTTCGGGAGGAGGCGCCCCCTGCAGGACCAGACTGACCACAGAGATCAGAGCAGGGAGAGGATGGTGGGAGTTGGGGGGGATAGTGGGCACTCAGGTAGCCAGAATAGgggggctctgtgtgtgtgtcaggtggGTTAAGAGGCAATGTGAGGCAGCAAGGCTGTACTGTGGAGATGAGAATGGATTTTCAGTAACTGGGCGGGCGGCCTGCCTACACTGTGCTGAAGGAGTCCCCTGGCCTCAGCTATCAATGGAACAGGTTCCCTGTGCTCATAAGAGATTCAGAGATGAGCAGAGAGAGTCCTACCACCTCACAACCCCCCAGCCCCAGTTTTCCCCAATGCCACATTTGTCagtcctgtctgtgtgtgtgtgttcagtgtttccCGTTACCACATTAGAGTCACGGTGCACCCAGAGAGAGCACCATATAGCTCAGCACACAGACTGTCAGCCAGGAGCAACTGCTGGGGTAAAATAGGAAGAAACACCATAGTCAGGGAGGCGGGAGAGCATGTTGCCTCAGTCAAACTCAGTCAGTACAATAGAGTAGTACAGTAGGGGCTGTGTCAGTAGTACAGGAGGGAGATGTCAGCACTGAGCAGTGTGTACGATAAACAACATGTGCTCTTccctgatacacacacacactccctcacttacatacactcacacaaacacacacacgcaaaagTCACTTGTTACTGTGGAGTTTGTTGTGTTCAGCTGAAGAGGTACTCAGAGCTCAGTGGCCTGGGTGTGAATGGGTCTGATGTGGAAGTCTATTAATTCCACACAATTTAAGTCATCAGCCCTAAATTGGGGCTGGTGAGAGGCCTTGTGCTGGCACTGTGATGGGCTGAGTGGCATGGGCCCTTTGCAAAGCTGGTTTCTATCTGCACTCAGCAGGCTGCTGATTCTGATTGTCTGTTAGCTGGAAGGGGAAACGACTGCAATTTAATTGTCTGTGTCCTTAGATGGTCCTCTCCTGAGAGGCTGAGATACAGCAGCACTATCAAGGGAAGGGGAGACTTGAATACATCATGTGCTGCCCACACTGATGGCCTGACTCAGAGTCTCTCATGAAAGGGAATTAGAAAGGCAGAAAGGAGGATGagatgcagaaagaaaaaatatatagaaaaagtATTTTAGAAATAAGAGTGCAGGGCCAGGTTACAGAGTTGGCAGCAATGCAGATTAGAAGAATCTGATAtgttcaacaaaacaaattgtgacAGATCTAAAGCTTCTCTCCTACTGTGATAACAAGACAGCTATGAAGAGCAGTGTCTCTGGTGGACATGTTAAAGTGCAAGTGCCAAAAGCAGGAGCTCTGGTGCCAGACTCAGAGGTGGACACAGGACCCTTTGGGTTGGCCAAACTGGCAGTGGCCAGCAGAGTGTGACTGAGCCACATTACTGACTGAGCACCCACCACCACATCACCACCCAGAATAATCAGCATGACAAGCATCATAGAAAAACTGAGATTCTGAAATGAGCATTGAAGTGCTAtatgaactttttttttaaatatagaaatagtAGGCTATATTTAGAATACTTCTAAAAAtcatagtaatagtaataatatgtttattgtAGATATGAAACACAAATACTCTCCAAGTGCCAGTAACATTCAACCCAGTATCCTTTCTCTGCttttgacagacagacaatgcAGACGTGTTTGCTGAGGTAGGTGTTGAGTGTTTGGATAGGAAATCACAGttagctgtctgtctgtttatgcATAGACAGACAGACGTTAGGTAGGCAGGAAGCAAGGCTCATCCTGACTTGGCCTTTTTTCAGAGCTGTTTGAAGGAGATTAGCTGGTGTTGCAGCACAGTGTCTGGTCTTGTGGGGGGCACTCTTTGAGGTTTTTTGGGGGACAGCCATGCTCAGCTGTTGCAGAAGTGTTAGCGTGAGTATGGTCTGTGACTACAATGAGAGTTTGTGGGAACAAAAAAGTTTCTGATGcttaaaaatattgttaaaaacccaaaacataataacattttcagaacaGCAAGGGTTTGGTATATTTTTCAGGTTTgtaattcaaaaaataaaaataaaataaaaacaacggTACTGGAGCTGTGTGCGAATCACCTaccttaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107634 lncRNA downstream 27831 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA downstream 35708 18622563 ~ 18623590 (-) True G86225
TU107606 lncRNA downstream 109541 18549444 ~ 18549757 (-) True G86203
TU107551 lncRNA downstream 335273 18323491 ~ 18324025 (-) True G86154
TU107375 lncRNA downstream 1025312 17633755 ~ 17633986 (-) True G86029
TU107657 lncRNA upstream 87543 18750672 ~ 18811147 (-) True G86244
TU107662 lncRNA upstream 255125 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 342487 19005616 ~ 19006432 (-) True G86253
TU107706 lncRNA upstream 489876 19153005 ~ 19153285 (-) True G86285
TU107752 lncRNA upstream 595428 19258557 ~ 19258855 (-) True G86324
AMCG00021469 mRNA downstream 51145 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021468 mRNA downstream 83864 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021464 mRNA downstream 181354 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 379513 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 410456 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021467 mRNA upstream 94 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021471 mRNA upstream 99799 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021470 mRNA upstream 134789 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021474 mRNA upstream 329595 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 395755 19058884 ~ 19073801 (-) True AMCG00021476
TU107532 other downstream 410404 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 732590 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1106532 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1107034 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1235880 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 158404 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 597816 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 612225 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 802931 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1666293 20329422 ~ 20335304 (-) True G86600

Expression Profile