RNA id: TU107653


Basic Information

Item Value
RNA id TU107653
length 1048
RNA type TUCP
GC content 0.50
exon number 2
gene id G86241
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18821533 ~ 18909908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGACTCCGCCGTGGCCGCGCAGCGCGCACACGGGCCCGCACGGATGGGGGAGACGGACAGCAGCAGGACGGAGGATTGTACCCGGAGATAACAGCATCATAACAGCAGCACTAATATCACACAAACTGCGCTACAACAGCAATATTTGGATGGCGCCTTAACGCAAATGATGACCTTAGAGATAAGTGTCACATAAAAAGGACAAAATCaaagtcatttttttgttttaacggAGACTATCTACACACATAGGCTAtaggttatttttaaataatcaaataacgTGTCTTCTTCCACATTTATCAGGAATGGGGCATCTGATAGTTCGCCAAGGCAGCACAGGATAAGCAGTCTGATTGTTGGATCAAGTGGAGCAGGCAGTGAATGAAGATCAGGCTGTCGCTGCTGTCCTTTCTTTCCCAAGAGGGAGGCATAATCTCTTGCTCATCGCACGGCCTGTGAATGGTTCGGGGAGCCCAGGAGTCCATGCCTGAGAGGAAGCCGTAATAGGAAGGGGCTTGGTGTGTATGTTGGTGTTCTGTAGTGGCGGTCTTTCACTGGGACAATGTGGTTAGCAACCAGGAGAAGCCGTCCACTTTCATGGTTACGGGATTGGCGAGGCACAGCGGCTGGCTTATGCTGCACCAGTGCTCTGTGGATACTGAGTTTGTGTTTGCCCTTCATGGTGGTCGATGGCCAAAACTACCTACCCACTGTGAATACACAGTATGGGAAGCTGAGGGGCGTCAGGGTTCCATTGCCAAGTGAGATCCTGGGACCTGTGGACCAATACTTGGGAGTCCCTTATGCTGCCTCTCCCGTGGGCGAGAAGAGGTTCATGCCCCCAGAGCCCCCATCTGCCTGGTCAGGGATTAGGAACACCACACATTTTGCACCCGTTTGCCCTCAAAATATTCACAACGCTGTGCCAGAAATCATGATGCCCATATGGTTCACCTTTAACCTGGATATAGTTGCAACGTACATACAGGATCAAAATGAggattgtttatatttaaacatctaTGTTCCAACTGAGGATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107657 lncRNA downstream 10386 18750672 ~ 18811147 (-) True G86244
TU107652 lncRNA downstream 158404 18659298 ~ 18663129 (-) True G86240
TU107634 lncRNA downstream 190066 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA downstream 197943 18622563 ~ 18623590 (-) True G86225
TU107606 lncRNA downstream 271776 18549444 ~ 18549757 (-) True G86203
TU107662 lncRNA upstream 8346 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 95708 19005616 ~ 19006432 (-) True G86253
TU107706 lncRNA upstream 243097 19153005 ~ 19153285 (-) True G86285
TU107752 lncRNA upstream 348649 19258557 ~ 19258855 (-) True G86324
TU107823 lncRNA upstream 536509 19446417 ~ 19448494 (-) True G86386
AMCG00021470 mRNA downstream 12282 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021471 mRNA downstream 48946 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021467 mRNA downstream 137112 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021469 mRNA downstream 213380 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021468 mRNA downstream 246099 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021474 mRNA upstream 82816 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 148976 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021477 mRNA upstream 166073 19075981 ~ 19100225 (-) True AMCG00021477
AMCG00021482 mRNA upstream 314523 19224431 ~ 19231673 (-) True AMCG00021482
AMCG00021481 mRNA upstream 338986 19248894 ~ 19252262 (-) True AMCG00021481
TU107532 other downstream 572639 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 894825 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1268767 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1269269 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1398115 17419604 ~ 17423418 (-) True G85953
TU107753 other upstream 351037 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 365446 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 556152 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1419514 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 1448393 20358301 ~ 20360255 (-) True G86640

Expression Profile