RNA id: TU107735


Basic Information

Item Value
RNA id TU107735
length 2233
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G86309
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19224453 ~ 19226768 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCaacatcatatttttattaatgcacATTTAGTGGATTAATTCAAGTGTTATTTGTTTGGATTTTCATAAGATATGCAAAATCATTAAGGATCTAAACACAGttaaaagcataattaaaaatatatattcccatTCACCCCAGCACCAAAAGATACATTTCATAACATGGAAAATGTTACTTGTTGTTGAAGCTTTTCGTGCTCCTTCATTACACAGAACTGTCCTGAGCTCCTTGAACAATTAAAGAGAAATATCAGAGGCTTCGGCGGTTGTTAGAAGGCACCCAAATGGTGGGGATTGCTTTCCATTAAGAGAATGAGAAAGATCTCCAAGATAATAAACTGCATTTGTGTCTTGTGGCTCTGAAACGAGAGCAGCCCGTAGACTAAACGCATCTCCAGATGAGATCAAGTTACAGCTCTCTATCCCACGGACACAACTCAAGGTCACATCCTATGGAGAGGAGACCCTGAACCGACCACGAGCCCTGAGCACACTCTAGTGTCTTTGAAACTGATGAAAAGGGGAAACCTGAATCACATTGATACGGATCTCCAGTGGGAATTAGCTGTGTCATCCGGACTTGTGAGCGGCGCTGCGATTAAGATCCCTTGGTACTCCTGATCAGTGTCTCAAGAGCAGCCCACTGCTCCTTCGTGACCTGGGCAGACCGGAGAAtcacataaCTTTTTCAAGCTGTTAAATTCGCCAGCCATGGATACATATTCACCTCCATCCATCCTGATCACCTGCAGATACAATTAATCACCACAGCCGTGATAACAAGCTTTCTAAGGGGGATAAATATCTGAAACTGAGACGAGGCGCCCATTTTAAACCTGTGTCTAAAGCCTTGTTCACACTGGCAGTTTGAAATGACTCAAACCTTTCTGACTGTTCAAACAACATTTACAAGAGCCTGAATCGGATGTATACTTATTCAGACTGTAGTCTTAAATCTGCCACGGCTATGCTAGTTCCTGCGCAGAGCTGTGGTTGCGCTCCTGCTGCCTGGTTCAAAACAAACGTGACTGTTTCCCAGGCTCTTGCtatgtttctatttgtgtgAATGATGTCTGGTCTCGGCCAGGAACGCATTCGCCGAACTTTGACGCACAGTGTCAATGTCTTTGGATGATTCTGCCTGCTTGTATGTTGTTTGTGTCGCAGAGTGATGATGTCATCAATGTGTCGCATACAGAGTGTCAGAAAAAGCACTTCAGACTGACTTCAGGGCACATAGATCAGATTTGACCGTCAGATTTTAATCAGACCTAAGCCACCTGTTGTTTGAATGTGGTTTGAAATGTGGCCTGAAATATCTGACTCCATGTGGCTCCTGCCTGTTCAGATGGCACAAACTAaatcagatttgatttgaacTGGAGTTGATAGGCCAGTGTGAACAAGACTTTAGTCTGAGAAGTCGAACACTCAAAGGATCCTGTTGTGTAGGAATCACAATTGTTCTTTTGGTTAATTACCACAACACCCATTTTCCATTTGAACTACTTTTGATTATTGTTAATTTGGCAGGTGTACAGGTAAGGTGACTTAAAACATTCTGCTACAACAACTAACTGGTAAGCCTTTCATAGTACTTTACCTAATAAACGGTCCTGGATTTGaaattttaaagtaaaacctACATGCCTTGAAAAGTTAAGGTAGATGTTGTGCAGCTGTAGGTGCCATTCATATACTGTTggtaggaaaataaatattggcgATGAGGAAGTCCAGAGCTCAGAGTTGTAATTAGCTTCAGGACTGTATGTGTCCTGAGACACAATACAGTTAGATTGTTTGGACAGATGGATGGATCCCCCCCACAGGTGTGGAGCTGGATCTCTGCCATGAAAAGTCAGACAGtggatattaattaattgtatgaaGTGTCACAATAACGAGAGCAGCACGGTGCCCAGGCCAGCCGTGAGCGAGTCTGgcagtgtgtgagtctgtgattgtgtgagtctggcagtgtggcagtgtgtgacTCGGTCATTGTGTGAGTCtggcagtgtggcagtgtgtgacTCTGGCAGTTTGAGGCCGAGGCGGGGGCTGGTGACTCACAGCTCCGGAGACCCAGCTGGCGTAGTCGCTACACAGGTAGGCAGCCAGGTTGGCCAGCTCTTGGGTGGTGCCCAGCCGCCCCGCCGGAATCCTGTCCAGCATGTCTGCTTCGAACATGCCGGCCGGGTCCAGCCGACTGAAGGCTCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107705 lncRNA upstream 71171 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 169350 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 544577 18679113 ~ 18679876 (+) True G86229
TU107639 lncRNA upstream 559920 18663193 ~ 18664533 (+) True G86227
TU107625 lncRNA upstream 605897 18615170 ~ 18618556 (+) True G86217
TU107751 lncRNA downstream 31690 19258458 ~ 19258855 (+) True G86323
TU107802 lncRNA downstream 165329 19392097 ~ 19394874 (+) True G86367
TU107824 lncRNA downstream 221961 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 359221 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 603048 19829816 ~ 19837813 (+) True G86454
AMCG00021478 mRNA upstream 4179 19202878 ~ 19220274 (+) True AMCG00021478
AMCG00021480 mRNA upstream 43932 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021475 mRNA upstream 104885 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021472 mRNA upstream 169354 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021473 mRNA upstream 178603 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021479 mRNA downstream 5360 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021485 mRNA downstream 54283 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021484 mRNA downstream 72768 19299536 ~ 19307124 (+) True AMCG00021484
AMCG00021488 mRNA downstream 115052 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021491 mRNA downstream 157261 19384029 ~ 19391754 (+) True AMCG00021491
TU107506 other upstream 974767 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2220322 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2510415 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2562571 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 2631480 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 52997 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 273032 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1115842 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1151655 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1172158 20398926 ~ 20401249 (+) True G86601

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2052193 True 1822 lncRNA 0.47 1 NC_048586.1 25733993 ~ 25735814 (+)