RNA id: TU107755


Basic Information

Item Value
RNA id TU107755
length 512
RNA type TUCP
GC content 0.60
exon number 5
gene id G86327
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19275354 ~ 19278023 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTTTGAAAGAGGCCTTCGTGAACCTCCTGCTCAACGGCCATCGGCGCTCGGACCTGCAGCTGAGGAACGACCTGCTGCTGATTTGCACAGCGGTCGCTGGGAACCCCAAAGCCCCGCTGATTGAAAGTGGGTTTACCAAGCAGCTCATCTTATTTGCAACGTTTCCTGAAATTAAGAGCCACAACCCTCTGGTGCGAAACCTGAAGCTGTCCTTCAGCGACGAAGACTTTGAAATGAAGAAGCTGCTCTTCAACATGCTTGTTGTCATGTCAAGGGATCTCTCAGCTGTGCagctgctgcaggaggggAAGGTGCTGCTGGCGCTGCTGCAGCATGTGAGGCCGGGTGAGGCGCCGCGCCGCGGGGAGTGGACAGCCGCCCAGCAGGAGGAACTGCAGCTGCAGGCCCTGGCCACGCTGGTCTCCCTCGTGCCCCTGCTGCCCCAGGACTACCTCACCTGCCAGGGCAGCACGCGCCTGTTGCTGCTCATGGACTGGTGCGTCTCGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107752 lncRNA downstream 16499 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 122069 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 268922 19005616 ~ 19006432 (-) True G86253
TU107662 lncRNA downstream 356823 18918254 ~ 18918531 (-) True G86249
TU107657 lncRNA downstream 464207 18750672 ~ 18811147 (-) True G86244
TU107823 lncRNA upstream 168394 19446417 ~ 19448494 (-) True G86386
TU107825 lncRNA upstream 170706 19448729 ~ 19449107 (-) False AMCG00021495
TU107933 lncRNA upstream 622435 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 625973 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 634514 19912537 ~ 19918803 (-) True G86477
AMCG00021483 mRNA downstream 914 19259434 ~ 19274440 (-) True AMCG00021483
AMCG00021481 mRNA downstream 23092 19248894 ~ 19252262 (-) True AMCG00021481
AMCG00021482 mRNA downstream 43681 19224431 ~ 19231673 (-) True AMCG00021482
AMCG00021477 mRNA downstream 175129 19075981 ~ 19100225 (-) True AMCG00021477
AMCG00021476 mRNA downstream 201553 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021489 mRNA upstream 18460 19296483 ~ 19296899 (-) True AMCG00021489
AMCG00021487 mRNA upstream 29334 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021490 mRNA upstream 66943 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021486 mRNA upstream 98388 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021494 mRNA upstream 114988 19393011 ~ 19409496 (-) True AMCG00021494
TU107753 other downstream 7893 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 365446 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1026460 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 1348646 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1722588 17547162 ~ 17552766 (-) True G86010
TU107835 other upstream 188037 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1051399 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 1080278 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 1117589 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1443861 20721884 ~ 20724880 (-) True AMCG00021534

Expression Profile