RNA id: TU107936


Basic Information

Item Value
RNA id TU107936
length 3765
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G86477
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19912537 ~ 19918803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgctttatttggaGTAGCTACAGCACATCGATACATTCTGAAGTCATAGGAAAAGCTTAGTTCATTTTGACAGAGTTGTATAGTTTGTATAGCGCTGCTGTGGTTTGTAATAATGTAGTTGCCGAAGTGAAACAGGGTGTGATCTCGCCTCTCGCCACAGAGCTGAAGCTGATGATAACAGAAGCTGGCCGGGTATAAATCCTCGGAATTAAACTGTTCTACATCTGGACATGTTCGTATGAGAGCGAGGGGAGATCGCAGGgcaggatttaaaaatacagattgtgTGCAATGTGACTTACTGTTTTGTAACTGTTAACGACTGAATCCTGCCAGAACTGGACAACCCAAGCAGGTCGTTATTAATATGCATTGATAGATTGCCTGCACTTCTAATTATATAGATTTAATGCCCTTATTGTGGTTAAGAAATGAAAGCTGAGAGAGCAGGGCAAGGCAAGCTGGTTCTGACCGGGCCCCTGCCGTCGCTTCCTTCGGAGAATCAGAAGTAATGAGATTCCGACAGAGGGCCGCAGAACTTGAAGGAGTCGACAACATGAGATTAAATcatcttaaatgtttttcattaagtgaGAAAGGTTGTTGTGATTTacagcaaaatgcatttttaataacagCTTCACTGCGACGGGTCTGTAAAGCCGTTGAAATTAATGAGATACATCTAATATTCACTCTCATAAATTGCCGTTCCCTTCGTGCGTCCCTCATTGTCAGCTGCAGCAGACGCATATATTATTATGAGCTTTATTTGATTCTTGCAAGGTGTTTTACATGCCGTGATCAAACAGACGTGGGATCGCTCCTGTGCTGAAGCTTCCCTCTCTGAGTCGCTGTGTCTTTATCTTCACAGCAGGCTGTGGGACTGAATGCAATATTCTGCCTGAAAAGgtatataaataatgtcttTGAGGAGAGGAAAGCCTGCAGTGTCTGacttcctattattattattattattattattattattattattattattattattaatgttataattattttatcagctgtcagatatatttatttgtttgtttatgtatttctcaCAGCAGTTGTCGTCGGTTGTGTCAACATGATCGATCGAGGGCTGTGTCCAGAGGTTTGAGCTGTTCTGTGAATGTATGCTGCATTGGGATGTCGCTCTGGCCCGGGGTCTGCTCCTCTCACACGCACTGCTGTCAAGCGTGTCCTGCTTCACAGAGCAACACGGGAAGCCCCTTCGCTCTGAGCCATGCAAATTGCGCGACTTGTGGATGCGGGACTGTGGGGACTGTGGCTGCGTGAAGACTGGCCTTGCGTGTGGGTTTCAAGGTCCCAGGCGTGGCTACTCAGAGTGAAGGGAAAGACcagagaaacacaacacaacacagctatAAAAAACCCTAACGCTGACTTGAGTGCCTAGAGGACGAGAGGCCGGCTGCTCTTGTTGTCCTTCCAGTGCGGCGTCTCCACCGACTTCCTCTCCCAGCCCTGGCGTATGCGCATGACGACCCTGTCCACGCAGGGCATTATGAGAATGAACTTGAGGACCAACACGATGCAGGGGACGACCAGGGACAGCATGTAGGCGGGGGGCAGGTAGAAGTGGTAGTAGTGGGGCATCAAGAACTTGCTCCAGCCGTAGAGGAAGGTGTGTGTGGTGCAGAGCAGCAGTGTCAGGTGGCCCAGCTTGGCTGCACAAAGCTGAACTCTCTCCAGTTGACGGCGTTGCTGACAGAGGGCAGAGATGTTATTCCAAGGAGGACGAACAGTCCAAATCCCAGAATCCCCAGCGATAAGTAGGAATCGCCTCTCCAGGCTCTGGTGTAATCAAACGTGATTGTATTATTCTCCCTCGCCTGAAAGATAAAACACATTGTCAAAGGGCTGGGGGTGACAAGGACAGAGTATCTGCCTGGAGGGGAAGCGACCACTTCGATGTGTAGAGTGCTCTGTGAGCTGGACCAattaaagattgattgattgattgattgattggtcaaggatttacttattttatgtttttcttggaTTACTCAAGCCAGTCCTACAATTCCTGATTTGATTTCATTGCCGGGACCCCTGGCCGAGCCCAGAGAGCGTGTTCAGTTTCTTATTTCGCAGCAGCACCAGGAGACTGGAGATCAATACTGATTGAGTACCTGATGAAAGGTGGACAGGTGATTTTGCTGAGGGGAATAAGGAGGAGGAATAAGCCCCTcctcctgacacacacaaaattacatttaaagttcaGAAACAAGGTGCTGCTGAGGAGCTCACATAGCAGACAGGAGAGGACAGTACTGTGGCATGGCTGTGTGACGGTGGCATGACCCTTCAGAAGCAGACTGAGCATCCCCCACTGAGTATCCCCCACTGAGCGTCCTCCACTGAGCATCCCTCCCGAGTAACTCCAACCCTGATAGCAGAAGGAAGATGACTGTACATTGAATGGCTGCAGCTCAACCCCATTTTCACAAATAAGGAAATCAAGACCAGTCGATCCTTGGGCTTAAATGTCCTGCAGTGTAGCtgcaatccatccatccatccatcatccatcaatccatccatccatctatatatcatctatccatccatccatcccttCATCCTGCTCACCTGAGTCACGGTGTACTTGTACGTGTTGAACCACACGTAGTACCGCGTGGGGATGATCAGGGTGTACAGGACGTGCAGGAAGGCCAGGGCCAGCGCCACCAGGCCCAGCTGCTTCCGACACAGCATCCAGCGGTCTAGCCATTCTGGGAAGCGCTTGTACTTGGTGCCGTTGTGCAGCTGCAGGAAGCCGGCCAGCGCCCCGGGCAGGTAGCACAATGCCAGCATGATGAGGGACACGATGGGGAAGACACGGTTGGCCAGGGAGATCATGATGCGGAAGGAGTTGTCATTGCCCTTGGTGACGCGCGTGTAGACGACGTCGCTCACCACACAGTACAGGAAGAGGACAGCAGTGAGGCCCGTGGCGATGTACATGGGGATCCTCCACAGGGGGAAGAGCTGCAGAGGTAAGTCTTCGATCTCCCTGGCGGCCAGCAGAgagcccttgtccagggcagtGAGGTTCAGGCTGTGGGCAATGTCCATCACCATCTGCTTGGATTCGTAGTCGTCTCCACAGACGTACACTGTCTGTTGGCGTCCAGCCCCCCGGACTGCAGGGCCCAGGCCGACACAGTGTTGAACGCTTTGACCACGTGGGCCGCAGGGACCAGGCTCTGCAGGTGCGCTGCGTTGGACTCCGGGTACTGATCGAGCTTCAGGTTGTTGCTGACATCCACCAGGACCTTTCCCGCCAGCTCTGAGGAGAACTGGCCGAGGAACTCGTAGTTCTCGCGGTGCACGGCGACGAAGATGACCCGGGACATCTGTGCGGCATCCACATGGCCGAACACCTGTGCCTCCTTAGGGATCAGGCTGGCGTTTTCGGGGCTCCGGCTCCCGAACACCACGGCATGCCCGGCCTGCAGCAGCCGCAGCCCCAGAGAGCGGCCAAAGTCCCCTGTGCCGAAGATGCACACGGTGCCCAGCTTACTCTGTGGGCCGGGCCGGGGCGCAGTCATGGCGATGGAGTTGCTGGTCATCTCTGCAAGGAGACTATGAATAAATTACTCCATAGGTATTCTCCAGCTCTGACAGGGAAAAGTCCTCAAAGCCTCTCTCAGCTGCACTCCTCTGCTCAGCACTGCTTTTTGTATGCGCTCTGGCCAGCCCCCCCGTGAAGGCGTGCCT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107929 lncRNA downstream 134 19903996 ~ 19912403 (-) True G86472
TU107933 lncRNA downstream 11701 19900458 ~ 19900836 (-) True G86474
TU107825 lncRNA downstream 463430 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 464043 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 653682 19258557 ~ 19258855 (-) True G86324
TU108002 lncRNA upstream 233417 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 362349 20281152 ~ 20281596 (-) False AMCG00021514
TU108095 lncRNA upstream 406890 20325693 ~ 20339742 (-) True G86598
TU108144 lncRNA upstream 436267 20355070 ~ 20356479 (-) True G86639
TU108154 lncRNA upstream 474241 20393044 ~ 20394206 (-) True G86648
AMCG00021508 mRNA downstream 2864 19905943 ~ 19909673 (-) True AMCG00021508
AMCG00021504 mRNA downstream 121365 19786814 ~ 19791172 (-) True AMCG00021504
AMCG00021503 mRNA downstream 137186 19768303 ~ 19775351 (-) True AMCG00021503
AMCG00021502 mRNA downstream 301641 19587219 ~ 19610896 (-) True AMCG00021502
AMCG00021498 mRNA downstream 327577 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021509 mRNA upstream 32214 19951017 ~ 19962097 (-) True AMCG00021509
AMCG00021516 mRNA upstream 287519 20206322 ~ 20207476 (-) True AMCG00021516
AMCG00021515 mRNA upstream 356255 20275058 ~ 20279375 (-) True AMCG00021515
AMCG00021514 mRNA upstream 362742 20281545 ~ 20284979 (-) True AMCG00021514
AMCG00021519 mRNA upstream 368518 20287321 ~ 20297650 (-) True AMCG00021519
TU107835 other downstream 443804 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 634514 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 645076 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 1002629 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1663643 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 410619 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 439498 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 476809 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 803081 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1145055 21063858 ~ 21083570 (-) True G86808

Expression Profile