RNA id: TU108097


Basic Information

Item Value
RNA id TU108097
length 5120
RNA type TUCP
GC content 0.46
exon number 3
gene id G86600
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20329422 ~ 20335304 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCCTTAAACACCCAACTTGCCATAACAGAAGAAGTGCCTGTACTGCCTAATCAATAACTAAGGTTCAGGAGTGGCCCTGAGTATTATTCCACAacctggataggggctctctcAGACCACAGTCCGCCGCAGGAGTGTGAGTGGCGGTACCGGTGTGTGAGGCAACGTGTGAGAGTCTGGGTcagcgtgtgcgtgtgtccgTGTGCAGCGCAGGTTCTGGGCAGCGTACCTAAAGCACTCTCGCTGGGGTCGTCGGGGTCAGGGGTGTTACTGCGCACGCTGTGCATGTCTCCTCTGCGCCGCTGCCGGTGTCTCCTCCTGTACTGGAACTCGGCATACTCCTGCAGGAACCACGAAGCACCGGCAACCTTAGCACTGTTCCTCCTCACCACGGCCCCTCCTGTCTCCCACATATCAGCCCCATAGCGCCCACTACACAACCAGTTAGACGGCTCTGTGACAGCTTCTGGCAGCCGAGTCGACCTAGGCTCCAGCTCGCTCACACACTGAGGTACACACGCTTTTGTGCCCGCACACGCCCTCACGTACAGCTTTGATTGGTCTGTCCGCTGCCATGAAGCTGCACAgaggcgcacacacacagcgcacAACACagtcacaacacacacaacattccAGGAGATATTATAGGgatgtacaaaaaacaaaaaacaagcaaacaaacaaacaaaaaacaaaaacacctaaATACCACATCctctttttgtttggtttttcctTTAGGCCTCTGATTGCTGGAGGTCAGATGTGAAAATCTGATTTCATGTGCGATGCACACATTGACAAGAGCACATCTGACTCTCGGGTTTTCCCTGTTTCAGGGCCCAGGCAGCAGATCCGATCGCACGGAGGAAGATGGTATGCGAGGTGTTTTCTGTACATCCCTGGTGAAACGCAAGCCTCAGAAAAGCACAACAAACAATAGAGAAAATCTGTAAAGGGATGCTTCTTCATATCTTTAGCTATTTACCTATCTAATAACACAGAGTGCTACAATATTCTGCAAATGCCTCTTGTCTTAATGTCTGGAATAACttattttcttgctttcctTGAAGATGGCTTTCAGGATCAGTTCcagatattaactgtatttttacaaaaagatttctagaaataatataattaaaatcttCCCTTCTACCGCATCttcttatgttattttatgtccTTTTTACCCCAGATATAAAACTATATTCTAATAGCCGTCACTTTCTCCTCTGTGAACAGAAAGCCAGGTTCTAACTGCAAAGAAAGGAGTCTGCGAGTGATTCTCGAACCCCACAGCCACACTAGCAACAACAGGGGTCTGTTTTTGTCTGCAGCGTGAAGAGCTTGTTTGTAGAGCGTGCTCACACGTCTAACAATGCACACAACATGCAGATTGCACTGAGTTATGTGTAACTGGAACTCCTGCTGGACAAACCCACAGACATGCAAAGAGGACTATATATCATCCGAGGGCAAAACCAACACAGATTGTACATAGACAAAGAAACTCCTTTTTCATAACATACCAAtgcaaacagagacagacagacacgtaTGTCcacacaaatgtaaacagagtAGAAGTATATATTTAGATATGAATGTTACACAGTAACATACTATTCAGGTACACAATAGTAGCACCACAGCCTACTGGAGCGAAAGTGCTCGGCTGCACAGTGTCTGGGCACTGGGCTCTCGGTCCTACGGGCTGGACCGCACTGAACCCTGTGCGTTCAGTCGGgtaaaaagcattttgttgaGCTAATCTACGTCCACTGCCCCAATGTGAGGTATTAAGGAACCGCAAAGATGGTGTGTGGTTTGTGTTAAGGCAATTTaggaacacacaacacagctttAATAGATTACTAGCATGCCTTGCCCTAAAACCCTGAACACATGTTAATATGCAGGCTTCCTGAAACACTGAAGGCCATCCAagagattataaatatgcaaaagaaaatgaatagtaATAAATAGCTTTCTACACCAGTCAGAGCTTCAGGACAATGATGTATCATTGCGAGAGTGAAagtgctgctctgtgtgtgtgaggtctACTGTATCCACCTCCCATTACAAACCCTGCGAGATAATGAAGCAGCAACAGATTTTTCTGTCCAATTTGTTGAGCTGTATgaatgttcattaaaataaataaataaataaaataggtgATTTTCCCCAAGCGATATGGTCACTGAAATCAAAGGCGtctaataaattataaataaacaaataaaaagaccaAATTccccacagaaaacaacacatttcagtgGGGATTTCAGATAAATACAAAAGGGATGAAATCTAACTGAAGGTCCCCAGGGAGCCTTTGAGCATCagaaaggaaaaagtaaaataatctgAGAAGGGGCAGACAATTCTCAATCAGATTCAATATTGATCCTTGCTGTCAGCTATTGGCAATGGTGATTTGCAATCATATCTGGGCAATGATATCTAAAGGCACACTGGACAGAAGAATAACTTTCTGTATACGCCTAGTCCCCCACGAGACCCAAGGGCCTTCGCCAGGATGAGCGTGTTTACAGCCGACCTCGACTAACGATGGCCAGGGCCAAATGGATATAAGCTAGCGGGCTCACCGACGGGACAGACGCCCTCGGCCCGACGCACATGGTCTGAACACCGCGGTCGAGTTTCCTCTGACGGAGTGACAGAGACGCGAGACCCCGAATACTTTTACAGGGACCATTACAAGACAGCCGTGTAACAGGACTATCCCCACAGAGGAAAACATTACTGCTGTGCGAATAAAGGCTGGCAGTTTATAATGACAGAGCCGGACCCGTACCAGGCCACCGCTGGCATCCTCTGATAGCAGGGTGTGTGCTATAACTACAAGGCCCGGTATTGCACAACCTAATGAACCCACAAAGGAATGGGTCACCTAGCATGCCTTTAATAACATTCCCAGTCTAGAAATCTGTGACTGTTACAGGGGGACAAAACTGCACTACTGGTGCTGGGATTATAATTGGAAAAGGGAAAGGCtttcacagtaaaaataaaataaagctggaaaaaaaaatcattccaatgttttttttttttgtttttttttttttaataacaattaaccATCAgaagtaaaaaagtaaaatgaaatagGAATAAGAATagtaagaaaatactttttttctgtacGACAATGTGCATGGTCTCTTCTGCAATACCTGCGGCTGGCCTTCTGAATTTTGACAGTTCTCTCTTTGATCATTCCTCCCAAGAACTGATTGATTCCTCAGGATCTTTAGATTAGAACAGAATGACACTTGAGTGACCTTCCTCTGCAAACACGGTTAGGCATCTACAAACAATCGCTTACGGAGAGCAAGTTACTTCCTGCACAAGCACTCAGTCTGTTAATGTCTTAGTCACATGCGGCCGTCTCTGCAGACGAACTCAACAGTACAGGCTACAGGAGAGCACAGTCTCACTACTACACAGGAGAGAGAAGCTACACGGCAGATAGTTACCTCAGGAGACGCAAACCCTAAGTACTCCCAGTCCCACGTGCCACCTGCAAAACTGCAAATACAAGATAAACAGTATAGCAGGCATGGTTTCTTTCTTCTCTTAACATTTGACAGATTCAATATTTCAGGATTGTGTTGCACTTGCCTACAAGCTAGCAAAACAGCAGACAGAATTCCGCCGCTCTAAGACTCCGGAACAGCAGCAGGTACACGACTCCAGCTTAGATAATTCATCTTCACAACTTAAGttacttatttatatgtatatacaattgttttttttttttgttcagattttCTTTCCTCCCCACAGGCTTATTGCAGGTTAAACTCTAAAGGCCTTACAGATTTAACTGAATTGCAGCACAGtcacaaatacattgttttcttgtaacacagaaaatgtctgttAACAAGCAGGTCTGGGGCATTAAGCTATGTAATACTTCTTGCCTTGCTTTAccagtactcgtattgttattttgatttgccCTATGCTCCAtttcccctggcccttgactgtgacttaacatcttgtctgcacttatcagcttttacagtctaggacgtaagaccttatatattgtttactgtatatgtcgtatacacttgtgtaaattgtgaatttgtaaaatgtattttgccttgaactgcattgtattattgcactttgtattgcgctgatattttataagtcgccctggacaagcacgtttgctaagaaataaataataataataataaaataatatgatacaagagggaaaacaacaacaacaagaacaacaacaacaacaacaacaacaaccagaaCGAGAGAAGAAAGCAACCATAAAAAGAACACAGGCATGTGTCAGagaaaagagggagaggaaggacagagatgagagagagagggtgagagggtgagagagagagagagagagagagagagagagagagggaggaagggaggagggggtaaaatacaggagagagagagagagaggtagagagagatggatagaaATGGGACAGGCAGCCATGCTGAGGGACGCAGGGACAGGGGAGACGGCCCACCTGCGTCGCGGGGCCTCGGGGGAGTCATTGGGGGCCACACCCCGGGCCACGGAGGCCAGGAACTCCTGCCGCTTCTGCTGCACCAGGCAGGCGGCGCGCACAATCTTATGCCGCGGCGTGCGCAGGTACGGCCGGTTCACCTTCTGGGCCAGGTCCTCCGTCACCATCTCCAGGTCAGTGCATGAGCTCAAAAATCTCTTTCTTTGTGCTTTTGGGTTCCAGAAAGAATCCGTAGGGGTAAGAGCACTTGAGGATGCGCCTGGTCTTCAGCAGCTCGTGCACGGCGTCTTCAATGAAGGTGGTGTCGGGGGGGCCGCCCTCCCCTGCggacacagaacacagaacacggGCCGGGGAAGGCGAGGCTGAGCGCACAGATCAAGTATGTCCGCATCCAGCGTGAACTCACAAGCATAGTAAAGCCCCCCCGTGGTCagcaggggggcggggggctcGAGTCTCACTTACGTCCGCTCAGTGCCCGGCTCAGCTGCTCCATCTTCTCTTTGGCGGTTTTCAGAAGTCGCTGCTCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108082 lncRNA downstream 47826 20281152 ~ 20281596 (-) False AMCG00021514
TU108002 lncRNA downstream 176655 20152220 ~ 20152767 (-) True G86530
TU107936 lncRNA downstream 410619 19912537 ~ 19918803 (-) True G86477
TU107929 lncRNA downstream 417019 19903996 ~ 19912403 (-) True G86472
TU107933 lncRNA downstream 428586 19900458 ~ 19900836 (-) True G86474
TU108144 lncRNA upstream 19766 20355070 ~ 20356479 (-) True G86639
TU108154 lncRNA upstream 57740 20393044 ~ 20394206 (-) True G86648
TU108199 lncRNA upstream 277359 20612663 ~ 20614108 (-) True G86689
TU108253 lncRNA upstream 486328 20821632 ~ 20822603 (-) True G86736
TU108256 lncRNA upstream 487696 20823000 ~ 20823964 (-) True G86738
AMCG00021519 mRNA downstream 31772 20287321 ~ 20297650 (-) True AMCG00021519
AMCG00021514 mRNA downstream 44443 20281545 ~ 20284979 (-) True AMCG00021514
AMCG00021515 mRNA downstream 50047 20275058 ~ 20279375 (-) True AMCG00021515
AMCG00021516 mRNA downstream 121946 20206322 ~ 20207476 (-) True AMCG00021516
AMCG00021509 mRNA downstream 367325 19951017 ~ 19962097 (-) True AMCG00021509
AMCG00021521 mRNA upstream 36496 20371800 ~ 20376570 (-) True AMCG00021521
AMCG00021520 mRNA upstream 43119 20378423 ~ 20389444 (-) True AMCG00021520
AMCG00021524 mRNA upstream 67479 20402783 ~ 20412472 (-) True AMCG00021524
AMCG00021523 mRNA upstream 79226 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021525 mRNA upstream 109239 20444543 ~ 20460278 (-) True AMCG00021525
TU107835 other downstream 860689 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1051399 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 1061961 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 1419514 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 2080528 18247661 ~ 18248894 (-) True AMCG00021460
TU108146 other upstream 22997 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 60308 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 386580 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 728554 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2819883 23155187 ~ 23160977 (-) False AMCG00021619

Expression Profile