RNA id: TU108101


Basic Information

Item Value
RNA id TU108101
length 1494
RNA type TUCP
GC content 0.52
exon number 4
gene id G86601
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20342610 ~ 20401249 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctctctctctctctcacacacacacacacacacacacacacagacaccaccTTTCTTTCTCAAGGTTTTGAAATCATATCCTCTCCAACTGCTGAGTGTCACAATGGACAGATCACGAGTGTGTGTGTCGGCTCTGGGACGGTATCTTAGTCCCCCATTCCTTCGGTCACTCTGCGTTTCTGCCCCCCCAGGCGTCCGTCTTATGAGCTGAGGGGATGCTCCAGTGCTTTCTCTTACACCCAGTGGAGAAGGCGTCACACTTGTAGCTGAACGGACAGCAGTGGACTCCGTCTTTGCAGCATTCGGCCTGTGAATGGGCAGCAACCCCAGACGCCATCGGGCTTCTTGCAGCAGGTGTTGTTGGGGGGGCAGTAATGCTCGCTGTCACAGCGAATGACGGAGCCGTCGGCCATTCCTCTGAGCGCCTCGCCCCGTGGACCCCTCTCCTGGCACTGCCGCCTGCCGTCACAGCCGGAGCCCCTCGCAGCACTGCGGGcgctgcagcagctcctccccACAGGGGCGGCGATGCTGTGGTTGTGGTTGGATTCGATGGCCGCCGTCTTCCTCAGCATCGGGACTCTTTCTGCCTCACCGGCTCGCTCACACATCATGGTCGCCACGTTGCAGCTGTAGCCTTCTGGGCAGCAGTGGCGCTGGTCGGGGCAGCACACAgcctgtaaacacacacacacacacacagcctgtaaacacacacaaacacacacacacacacagagcctacaaacacatacacaaatccTGAAAACACACAGCCTGAATTCCATAGGTTACATTTCCGATTACAGCAGCCATGATAATGGGTAAATCAGTAGAACACGTGTGTTAACAATCACAGATCGCTGCTTGCTGAGGGCCCATGACGGTGTCTGTCTGAAGCCTTGAAGAGAAACAGTCAAAGCGCCAGTTTTCAGTGGATCTGTGGCTAAATAAGAGCGCCTACTATAACGGAGAGGATACAAAAACGGGAAGCGCAacttatacataaaaaaagcgCACGAAGAACAGAAACTGTCCCAGAGCTGCTTTCAATCAGGGACACACATACCTGCAGATGAAACATACGGGCCCTCAGAATGACTGTGGGTCTCCTCGTGTCAATTAACACTGCATTGACACCTGAGATAGAACCACACAAATTGGATGTTTCCATCAACATAAAGCAATATACAATTATGAATATGGCATGCCATCATTAGTATCATTGCTGCAGTTTCTTCttgctattttcatttttaaagctttctaaataaaaatgtatgttttctcgCTTCCTTTTACTTCTTGCCTCGGCTCCAGCGACATTGACCGGCCCGTAGTCTTACCTTCGGGATCGGGCAGCACTGGTACCCACTCGGGGACGGGCAGCAGGTCGACCTTTCCGGACAGTGTCTCCCATCTGGACAGGTCACAGAACCGCTGGCCAGTCCCACCAGCAACACCAGTACACTGGCTCTCAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108061 lncRNA upstream 43828 20298462 ~ 20298782 (+) True G86573
TU108008 lncRNA upstream 137072 20205192 ~ 20205538 (+) True G86536
TU108001 lncRNA upstream 189844 20152245 ~ 20152766 (+) True G86529
TU107909 lncRNA upstream 447991 19852369 ~ 19894619 (+) True G86455
TU107908 lncRNA upstream 504797 19829816 ~ 19837813 (+) True G86454
TU108128 lncRNA downstream 7155 20408404 ~ 20409658 (+) True G86625
TU108136 lncRNA downstream 61006 20462255 ~ 20462991 (+) True G86633
TU108173 lncRNA downstream 99537 20500786 ~ 20501303 (+) True G86665
TU108178 lncRNA downstream 107259 20508508 ~ 20547410 (+) True G86668
TU108195 lncRNA downstream 211377 20612626 ~ 20614365 (+) True G86685
AMCG00021518 mRNA upstream 2872 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 68227 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021512 mRNA upstream 228515 20112413 ~ 20114095 (+) True AMCG00021512
AMCG00021511 mRNA upstream 284825 20022522 ~ 20057785 (+) True AMCG00021511
AMCG00021507 mRNA upstream 360181 19975603 ~ 19982429 (+) True AMCG00021507
AMCG00021526 mRNA downstream 79962 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021527 mRNA downstream 104776 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021530 mRNA downstream 130919 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021529 mRNA downstream 153244 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021528 mRNA downstream 176444 20577693 ~ 20589296 (+) True AMCG00021528
TU107857 other upstream 841368 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1059695 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 2092924 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 3338479 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 3628572 16656644 ~ 16714038 (+) False G85787
TU108198 other downstream 266221 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 697170 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 697343 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 757375 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 828603 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile