RNA id: TU108117


Basic Information

Item Value
RNA id TU108117
length 1689
RNA type TUCP
GC content 0.57
exon number 3
gene id G86616
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20378423 ~ 20380424 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGATTACTGAGATTTTATTCCACTGTATTGTAACACATGGGGAACAGGTTCACTTCATTGACAGTAACTTACAAGGTTAACATTGGGATGTCATGGATCATGGATGTCATTCCCAGTTACAGGGGGCAGTCATGACGTCACAACAGTCTTAGAACCGACGAGTAAATAATGCATTGTGATCGAAGCTACTCCTGATCGCGCCTCTGTGATTTGGTCCTCAATTGCACACATCCAGAGGGGTACATTAGAAATGCTTTCACTGCCTCTGCAGATGACAACACCACCCAGCTCTCCTACAGTGTACAGTCAGATAAACTGTGAAAATTAAAGTCATAGCTATTCCCAAacaaaaatgattattaaagaGGTGTGCGTCCCTCTGTAAGACTTTCCTTCGATTAATAACACAATCCTCACTGCGGTGCTCAGGAAGTCCGGACCGCAACGGATCCCAGCTGCACGACTCAAATTCCTGCCAAGGAAAATTAGGAGGCAAACGTGGAATCTGCAGGTGGATGGAGCCCCGGAATAATTCCGGGCTCTCTCGGCTTCGGTTCACACAGGAGTTGGAGATGCACAGTGCAGCGGTGGGAGTGAAGAGCCTCAGGGTGGCCTGCCgtgtctctccgtctctctccctctctgtctctatgCTAGGGTCACTCTCTGGCCGGCTTTAAACGTGGCCAAGCCCGGCGTCTTGCCGTCACAGGAGCTTCCGAAGGCGTTGTACCTGCGAGGACACGGGGAGGGAAGAGAGCCGGGGTCCTGTTTGCTGATGGAGGCTCTGGTGGCGGTCAGGGCCGCGCTCAGGTGTGATTGACAGATGGGGAAGGCGGGCTTGATGGGCCCGGCCTGCACGAGGATCGAGTCATCctgcagacagagggagagagacagcgcCGGTGAGCAGCAAGTCGCACCCCCTCTCCCAGGCACCCCCGAGATGTGGGCGGAAGCGCGGGCCGCCTCACCGTGGCTCGGACACGGTAGTTGCTCTTGAGGTGGCCAATCTCCGCCCGCAGTCGCTCGATCTGCTCGTGGCCGAGCTCCTGGAAACCCTCCTGCAGGGAGGCCATGAAGACCGGAGCCTGGGATGAGCCGGGGTCCCGCAGGGAGGTGCCCGTCAGGTCGTGGGTCATCGAGTTGGGTCCCGACAGGCACTGCGAGTTTGATATCACTACTGCTGCGATGCCTGTGCGTTCAAACCCATCCAGAGAGACGTTCCCGTCTAGTAACATTAACTCTCATCATCAATCGTCTCCTCGTTTCCACTGCAGTGGCTGgccagctgtgctgtgctttcAGCCCACAGGGTGTGTGTTCATTCAGGGCTATCATCTCTCATCACAACCACAGCGTATCGCCTGACCAGCTCCGAGGGTGAGGCGTTCCCCAGCTCTGACTCGTAGGAGCTGCCGAAGTAGaggcgccagacattgtgccgCGGGTCCTCGGGCAGCAGCTCAGCCGAATCCAGCAGCACCATGGAGTTCTCCAGTGCGCCCTCGCCCTCCCCTGCCGAGTCGTCCGAGCCGCTGCTGTGGTTCAGGAAGATCATGGAGGACAGGCTGACGTCGCTGTCCGAGCCGCAGCCCCCGTCCTGTGGCAGGGAGGAGGGCAGGAGGTCAACACGCAGTCAGGGGtttcaacacacacatgcacaaaggTGTAACGCTGGAGCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108113 lncRNA upstream 6887 20370645 ~ 20371536 (+) True AMCG00021517
TU108061 lncRNA upstream 79641 20298462 ~ 20298782 (+) True G86573
TU108008 lncRNA upstream 172885 20205192 ~ 20205538 (+) True G86536
TU108001 lncRNA upstream 225657 20152245 ~ 20152766 (+) True G86529
TU107909 lncRNA upstream 483804 19852369 ~ 19894619 (+) True G86455
TU108128 lncRNA downstream 27980 20408404 ~ 20409658 (+) True G86625
TU108136 lncRNA downstream 81831 20462255 ~ 20462991 (+) True G86633
TU108173 lncRNA downstream 120362 20500786 ~ 20501303 (+) True G86665
TU108178 lncRNA downstream 128084 20508508 ~ 20547410 (+) True G86668
TU108195 lncRNA downstream 232202 20612626 ~ 20614365 (+) True G86685
AMCG00021517 mRNA upstream 7407 20368153 ~ 20371016 (+) False AMCG00021517
AMCG00021518 mRNA upstream 38685 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 104040 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021512 mRNA upstream 264328 20112413 ~ 20114095 (+) True AMCG00021512
AMCG00021511 mRNA upstream 320638 20022522 ~ 20057785 (+) True AMCG00021511
AMCG00021522 mRNA downstream 9333 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021526 mRNA downstream 100787 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021527 mRNA downstream 125601 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021530 mRNA downstream 151744 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021529 mRNA downstream 174069 20554493 ~ 20563626 (+) True AMCG00021529
TU107857 other upstream 877181 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1095508 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 2128737 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 3374292 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 3664385 16656644 ~ 16714038 (+) False G85787
TU108100 other downstream 18502 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 287046 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 717995 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 718168 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 778200 21158624 ~ 21165032 (+) False AMCG00021551

Expression Profile