RNA id: TU108173



Basic Information


Item Value
RNA id TU108173
length 518
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G86665
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20500786 ~ 20501303 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaactgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtaatGGGGCTGCgcagccgcagaccagtcagggtgcccatgctgacccctgtgcactgccgaaagcgcctacaatgggcatgtgagcatcagaactggaccacggagcaatggaggaaggtggcctggtctgatgaatcatgagttcaaggtgttgacttggcctccaaattccccagatctcaatcctatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccacgcctcgacgggtcaggactgttttggcGGCGGCTGTTttggacctacacaatattag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108136 lncRNA upstream 37795 20462255 ~ 20462991 (+) True G86633
TU108128 lncRNA upstream 91128 20408404 ~ 20409658 (+) True G86625
TU108113 lncRNA upstream 129250 20370645 ~ 20371536 (+) True AMCG00021517
TU108061 lncRNA upstream 202004 20298462 ~ 20298782 (+) True G86573
TU108008 lncRNA upstream 295248 20205192 ~ 20205538 (+) True G86536
TU108178 lncRNA downstream 7205 20508508 ~ 20547410 (+) True G86668
TU108195 lncRNA downstream 111323 20612626 ~ 20614365 (+) True G86685
TU108197 lncRNA downstream 119203 20620506 ~ 20620721 (+) True G86687
TU108205 lncRNA downstream 197911 20699214 ~ 20702457 (+) True G86695
TU108243 lncRNA downstream 399724 20901027 ~ 20902855 (+) True G86727
AMCG00021526 mRNA upstream 7612 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021522 mRNA upstream 107525 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021517 mRNA upstream 129770 20368153 ~ 20371016 (+) False AMCG00021517
AMCG00021518 mRNA upstream 161048 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 226403 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021527 mRNA downstream 4722 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021530 mRNA downstream 30865 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021529 mRNA downstream 53190 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021528 mRNA downstream 76390 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021532 mRNA downstream 201801 20703104 ~ 20721264 (+) True AMCG00021532
TU108101 other upstream 99537 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 99537 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 120362 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 999544 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1217871 19279765 ~ 19282915 (+) False AMCG00021485
TU108198 other downstream 166167 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 597116 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 597289 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 657321 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 728549 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile