RNA id: TU108178



Basic Information


Item Value
RNA id TU108178
length 357
lncRNA type read_through
GC content 0.42
exon number 2
gene id G86668
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20508508 ~ 20547410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagtgcattgtacagtctgaacattactgcccttgttttaaattctacacttttgacaatataccctaacatcctgtttgcctttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctgttcctcccatagtgtaattatagtggacatttttgttacctgcatgtaataccttgcacttgtcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108173 lncRNA upstream 7205 20500786 ~ 20501303 (+) True G86665
TU108136 lncRNA upstream 45517 20462255 ~ 20462991 (+) True G86633
TU108128 lncRNA upstream 98850 20408404 ~ 20409658 (+) True G86625
TU108113 lncRNA upstream 136972 20370645 ~ 20371536 (+) True AMCG00021517
TU108061 lncRNA upstream 209726 20298462 ~ 20298782 (+) True G86573
TU108195 lncRNA downstream 65216 20612626 ~ 20614365 (+) True G86685
TU108197 lncRNA downstream 73096 20620506 ~ 20620721 (+) True G86687
TU108205 lncRNA downstream 151804 20699214 ~ 20702457 (+) True G86695
TU108243 lncRNA downstream 353617 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 361407 20908817 ~ 20911992 (+) False AMCG00021539
AMCG00021526 mRNA upstream 15334 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021522 mRNA upstream 115247 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021517 mRNA upstream 137492 20368153 ~ 20371016 (+) False AMCG00021517
AMCG00021518 mRNA upstream 168770 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 234125 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021529 mRNA downstream 7083 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021528 mRNA downstream 30283 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021532 mRNA downstream 155694 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021535 mRNA downstream 187304 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021537 mRNA downstream 250288 20797698 ~ 20827291 (+) True AMCG00021537
TU108101 other upstream 107259 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 107259 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 128084 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1007266 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1225593 19279765 ~ 19282915 (+) False AMCG00021485
TU108198 other downstream 120060 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 551009 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 551182 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 611214 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 682442 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile