RNA id: TU108195


Basic Information

Item Value
RNA id TU108195
length 1740
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G86685
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20612626 ~ 20614365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctattgaaaAAGCTTTTCACAAAAGCTGGTCAATGGTGCATTTATAAAAcagggatttcttttttttttagacatcAACAATCATGTCAGTCAACAtaaaagagaaacagacacaggcagcaaatatgaaaaaataataatatatatacggAATAAGAAATGGTAGCTTCCACAGGGTGTATACTGGCAGAGTATTCCCACCAGGGTTTCTAGTACATTCTatatacagtgtacagtacaaCTTAACAACATACATCATATCCAGAATATACAGTAAATGATCGGTCAGAATATAGAATCGCTTTTAGAATACAATGGGCAACACAGGTAATCAATGCATGTGTACAAGATAGGTTTCAtcttttcaaaatcataattCGGCACAGCCCTCAAATAAAGGATAACAGAGCgatgtttaatgtattgaatgaacacacaaaacagattgTGTTGAATGAGTGCCGAGATGTGATCCGCACCCACCGGTGTTTTCATGTCGAGGGCTTTCGTGACACGAGTTCCATGAGGGATAATTGTAGCGCCTATTGTTACAATGATATTTTTCTTTAGTgcatgtattgtgttttatttttgtcgcAGTGTTATTGTATTCACTGAACCGAGACTTGAATGTGTCATTAGCAAGCGAGCCCGGGCTGATACAGAGAATTATAATCTcccacaaaataatacattcaaatacaacaGTGTGAAcgattaaacaaaaataaacagacaaatgtcACATTATAGGATAAGGGACCCATATTATATACTTATGTAATAGTAAGTAATAATGGtacactgaattaaaatgtatgattgttTTGCTGCATGTTCATGTAATCCAGCCAATCAGAAGCGTTCTGGTCAATATTTCAATAACAATGATCctaatacttttaataatggatttataATTGGTTAATCTCTTAATCCATTCAAACATGAAGTGAGTGCCTTATCTATCAATCAAGATAGAGAGATATCAGTAATAGTTCTTCATCCAGCACACAACATTAGGAACTGATGCATGggaatgaatgtgaaattaatctaagAGTAAGATGCTCATTTCTGAACATCTGTATGGATCTCTTCTGTGGAAAATTGGGAGAACCAGCTGTGGCAATCTTATTGTACGAAATATTATCTTAAGAAAGCATCCACCGGTGAGTCAAAGtcaaatacacagtatttaATTTGCAATCCCCATCTGCATCAGCAATGATGTCTGCCACCTATGATTGATAATGTGGAGTTGATAAAGATAAAGAAATTGTGTAACAGAGTGTTGCCAAATGAtgcttgataaaaaaaaaacacacacacaaaacaaaaaacagacaagtaaatcaaaaatacaataaaatgaagacATTTAGGTTTCCCACAAATATCCCCTGATGTTGTGAATATTGTAGGTGTTAGCTACACAAGGAGAGATGATAAACTTGCTGAATGCAAGAGTCACAGCTCAccgtgtacagtacagtgtgcaATTGTGCAAAGGCAGCAGCTTACAGATGTCCACCGGCAGGCAGGAGGAGTGCAGAAGTGTCTGAGAAAAGCACACTGAGGATTTGCACACATGCAGCCACTTAATTGAATTCCTGTACAGTTATTATCTCTGTTGTCtcttgtgcttgtgtgtttgttagttttccGGTGGGAAGATCACTTGAGTAATAAGGGTTCTGTCACTCATAGGTGCTGGTGCCTTTGCCAGGGCCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108178 lncRNA upstream 65216 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 111323 20500786 ~ 20501303 (+) True G86665
TU108136 lncRNA upstream 149635 20462255 ~ 20462991 (+) True G86633
TU108128 lncRNA upstream 202968 20408404 ~ 20409658 (+) True G86625
TU108113 lncRNA upstream 241090 20370645 ~ 20371536 (+) True AMCG00021517
TU108197 lncRNA downstream 6141 20620506 ~ 20620721 (+) True G86687
TU108205 lncRNA downstream 84849 20699214 ~ 20702457 (+) True G86695
TU108243 lncRNA downstream 286662 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 294452 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 420737 21035102 ~ 21038425 (+) True G86800
AMCG00021528 mRNA upstream 23330 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 49000 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 61696 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021527 mRNA upstream 88300 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021526 mRNA upstream 119452 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021532 mRNA downstream 88739 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021535 mRNA downstream 120349 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021537 mRNA downstream 183333 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021536 mRNA downstream 215488 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 260758 20875123 ~ 20886781 (+) True AMCG00021541
TU108101 other upstream 211377 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 211377 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 232202 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1111384 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1329711 19279765 ~ 19282915 (+) False AMCG00021485
TU108198 other downstream 53105 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 484054 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 484227 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 544259 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 615487 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile