RNA id: TU108198



Basic Information


Item Value
RNA id TU108198
length 458
RNA type TUCP
GC content 0.58
exon number 1
gene id G86688
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20667470 ~ 20667927 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTATGAAACCGGCTGAATGTGCAGATAAAGCTGGCAGCTCAATCCAGTGGCGGGGAGTTTGCAGGATCTACAATCCGGAGCGCACGGAGTCCCGTTTGCCAGTCAATCCCATCGCCAGAGATGCGGCTCTCttcctttctgtcttttctgtCTCACAACTGCATGCGCTCTGGTGTCGgggttggaggggggggggtccaCTTCAGGCAAAACAACAATTTGGTGAGACGAAAGCCATGGCAATTAATTTGCAATAATGCATGTGTTTCTTTTCCTGTCTCTAATGACTGGCTGCTCCAGGTGGCAGTGCCAGTGCTCAGTGCGCACACCGGTAATCCTGCGGGCGGAGAGGCGCACAGTGCGCGCAGTGGGGCGGCTGCAGGGACCTCCTCCTCGGGCAGGGCGGCTGGGGAGCTCCGGTCCTCTTAAAGACGCCCTGTGCGCCGCTGCCTCcgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108197 lncRNA upstream 46749 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 53105 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 120060 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 166167 20500786 ~ 20501303 (+) True G86665
TU108136 lncRNA upstream 204479 20462255 ~ 20462991 (+) True G86633
TU108205 lncRNA downstream 31287 20699214 ~ 20702457 (+) True G86695
TU108243 lncRNA downstream 233100 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 240890 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 367175 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 504163 21172090 ~ 21175659 (+) True G86833
AMCG00021528 mRNA upstream 78174 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 103844 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 116540 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021527 mRNA upstream 143144 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021526 mRNA upstream 174296 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021532 mRNA downstream 35177 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021535 mRNA downstream 66787 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021537 mRNA downstream 129771 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021536 mRNA downstream 161926 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 207196 20875123 ~ 20886781 (+) True AMCG00021541
TU108101 other upstream 266221 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 266221 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 287046 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1166228 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1384555 19279765 ~ 19282915 (+) False AMCG00021485
TU108360 other downstream 430492 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 430665 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 490697 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 561925 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 561925 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile