RNA id: TU108205


Basic Information

Item Value
RNA id TU108205
length 1755
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G86695
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20699214 ~ 20702457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAACCTTTAATATTATATGAGATGtgttaaataaactgtagaTCTCGGTTTAATCAGATTAAGAGATTAAGATGTTTATACAGATTACTTTAAAACCCAGACTGGAGAGGGGCTGCAGGTCTCTTTAGGGCTGTACCAGCGAGCCGAGGAGCGGGCAGGGACAGAGGGCAGCTCACTTTAAGTGGCGAAAATGCCCGTAATTAATGTGGACGATTTGACAGACAAGGATAAACTCAAAATGGAAGTAGATCAACTGAAGATCGAGGTGAAACTCGAGAGAGCGCTGGTCTCCAAATGCTGTGAGGAGGTGCGAGATTACATCGAAAGTGGATCAGGTGAGGATCCCCTCGTGAAAGGAATTCCTGAGGAGAAGAACCCATTCAAGGAGAAGGgaggctgtgtgctgtgttaaCCTGGATGGCAGAGAAGAACTTCCTTTACTTTAGGAGACATGGACACCTATAACATTGGATCACAGCAGTGATAGCCAAGATTCAAGAAACACCCAAAAACAAATTCTCACCTTGCACCACATCAGTCTGTGTTTCCCAAAACAGTGCATTTAAATCCCTATTTAAAGTGATATAGTAACATATGAAATACTGTGCAATGATTGTGAGCTTCGTTAGATGGAATATGTTTAATTTCCCTGAGACCCTGTTGTCTCTGCACCATCTGTTTCAGTGCCCAACGTAACACTTTCATTAAATGAGCTTGTTTACAACAGGACAGTGCTTTTTTTGGGGTCCCAAATGTTTAaggatttgatttttatttacagaagaaaaatacatattgttgaAATTGGTATAATTATactatgttgtttttcttttctgaagattaaaactgaatttaatataataagttGAAAGCGCAATTGTAGTTCTCGCAGGACGAGATCTGGAGATAAAGTATTCCTTTTGATATATCCAGACCAAGTCAAAACCCAGTTGACACAGCTGCCAATCACACATTCAGTACCAGCACCTGACAGAGGATGCTTTCATCTACTTCCCATCAAGTGCTTTGCTATGAATATATGAAGGGTGGGTTGGTTAAAGCTTTGATTTGATCAGGGCCTGGCAATCAGTTTGGAAGCAGCATGCATTAGGGACTGGGAATTGGGAAACCTTCCTGATTCACCACATTCAATCAAATACAGAATTAAAGACAGTAACatctttcttgctttctttggGTCCAGAGACTCGCCTGAGTACATTGGTTTGAATTCAGATTAAACCGGGGAAaccttttctgttttacaaAGGCAGccatgtaaagaaaacaaaggaccCAGTTTCAGGGCTGGTATGCTACTGGAGCGGGATATAATATGCCTATAGGAAATGTGAGTGTCTATCAAATAAGAAatctacaatataaatattgtgtatagaagtaaaacacaattaatcaGGTATGTCACTCAGGgcgttatttatttaaattattttactaaatcATGGAGCAACAGTAGTAGCCTAATCATCCTGACAGAGTCGTCTATCATAGGAGAtgagaagaaaatgcaaatgagaaAGTTCATCAATGCTGCAGTGCaaaggagagggggtggggggacttCACTGTATTCAGATGTTTATCTAATATGATCCACAGTTCAGCTGCTTCTGGTAAATTGTGTCACTCTTCATCTCAGAGTTTGATAATTCCATACAGGATGACCCCtctttgcactgtactgtgggAGAGGAATGAAAACACCCTGCATGgcattaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108197 lncRNA upstream 78493 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 84849 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 151804 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 197911 20500786 ~ 20501303 (+) True G86665
TU108136 lncRNA upstream 236223 20462255 ~ 20462991 (+) True G86633
TU108243 lncRNA downstream 198570 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 206360 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 332645 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 469633 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 534644 21237101 ~ 21238163 (+) True G86859
AMCG00021528 mRNA upstream 109918 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 135588 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 148284 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021527 mRNA upstream 174888 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021526 mRNA upstream 206040 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021532 mRNA downstream 647 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021535 mRNA downstream 32257 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021537 mRNA downstream 95241 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021536 mRNA downstream 127396 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 172666 20875123 ~ 20886781 (+) True AMCG00021541
TU108198 other upstream 31287 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 297965 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 297965 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 318790 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1197972 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 395962 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 396135 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 456167 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 527395 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 527395 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009883 True 580 mRNA 0.46 3 NC_007123.7 3249054 ~ 3252263 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_04575184_04576337.mRNA False 403 mRNA 0.44 2 CI01000047 4574991 ~ 4576337 (-)