RNA id: TU108257


Basic Information

Item Value
RNA id TU108257
length 2190
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G86739
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20824022 ~ 20854294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAGAGTacatgtctttttatttttaggaaacAGTGATAAAAAAAGGGAATTCAGTCATTTCAGTCAAAGGAAACACTGATTCAAATGTGGATAAACAGAGTATTATTTACCAGCATGAGTTTCCTTTCGCTCGAAAGACGTGGAACTCTAGATGACCTGATATACAATTAGATTTTAACCTGGACTATGCTATGCGACTACATCAGAGATTGAGGGTTTGTTATATGTACAAGCTGGTGGAAAGTAACGTGAAGAGATGGGTTTCCTCAAGCAAGAGGAAACAAGAGGGTGGTGTCAGGAGACGGGACAACTGCAAACACACGACAGGTAATGAAGAACCCAGGTGgaatgagaaagaaaagacaTTCGTAAGCCAatggttttagttttcttctcatttctttgcttttcctttccATTCCATCTTGGAATTGATTCTGTTACCTCACAGAGGGGAAGGGGGCTTATCTACATATAATTACATTGGAAAACAATATCTCTTAGTGATGAGTAGTGTTCCTGTGGCACCAGACACATACAGATGCTTCTTTTAAAAAGATTCCCCCAAATCTCTGCCctttgggaaaacaaacaaagaaaaaaggtatGATCATTTGTAACATAAATGCACTTTACTCGTTGAGTGGTGTGTTTCGGAACATCGGACATGCTTTATTTCAGAacttttcacaatttatttaaacatctcacatatacaaaataggtacaataaactttttttaatttttggtgGCTGTTGTCGTAGAGAAAGATTCCTCCGTAAACCCATTCGAATGGACAAAAATGTGCTGAAAGCATGGACACCTGGTTgaagaaaaagggagaaaaaaaaccaaaacaaaacaaaaacaaaacagaggcCTAGGACTGATCCACATGCTTAATACGGGTCATCAGAGAGAACCGCGTGACAATCCATCTTCGGTACAACACAAtgtaatacagtaaaagtgGTTAGGATTTGAGCTGGGTTGTTCAAACGCAGCACCGAGTATAGCACCATTTTCACTGCTTCAAGTATCTAAGCCGTGTAATACTGTTTTTAGCACCTTTTTAACAGGACCGAGATATAAGTTGcctttgttaaaatattaagtaTGTGGATCAGGTTTTAAAACAAGCATGAGGTAGTTCAAACCTTTGGAAGTTGTGGTTTTAAACTTCCTCTTTGGAAGATATACAAAGACCACAAATGGTGCAtactttcattgtttttatttcacttttttattttacaaatgctgACATGTCCCACAACAAGGTGATTCCCACGTCTCTTGGGGGAAAGGGGCGGGGGGAAGGGGCTGTATTAAATTGCATTGCACAAATGCTCCGTTCAGTCCATTGTCTCCTCCGATAGGCCCGAGCTTAAGCAAGTGGATGAGCAGAAGAAATCAGcattcagtataaaaaaaaaacagaaatggcgAGAGagattttttgattttgatttcttttcttttctttctttttgtttaatttatcatGAGTCTACTTATTTGAAACAGACTGGGCCAACGTCCAAACCAATTTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATATCGAGGATGGGGAGACGAGAGGGTTTCGATGTTTTGTATTCGATGACTGTCTTGCCCCACTGGCCGGTGTGTCCGTGCAGCCGTCCTCCAGCACGCTGAAAGTGAAGCGGCTGTTCCCCTCGGCGCGCAGCTCCACGTCGTTGGAGCCCTGCAGCAGAACGGCCTTCTTCAGGTTGCCGGTCTCGGCGTCCATGTAGGCCACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGCAGGCGCATGAAGGCCAGCTGGGTGGCCATCATCTGGGGAGTCAGGCTCTCGTCGTTGTAGGCAAACCTCAGTGCCACCAATGATGGTCTCTCCAAACCAGACGTGCTTCTTGTCCTGAGAGCTTCTGTACCAGTTCTTGCGGGCGAAGCTGGCAGGGTGGGGATAGATGCAGGTATAGCCGGTGGTGAAGTCGCAGTGGACCTTGATGGCATCCATGGTGCAGCCCTGGTTGGGGTCAATCCAGTAATAGCctggaaaggaaattaaattagtGTTAGTCTGTGAACAAGACTCTGTGGTGAACAGGCCAAGCAGAGCCAAATTACTGGACTGGCAAGATTGTGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108256 lncRNA downstream 58 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 1419 20821632 ~ 20822603 (-) True G86736
TU108199 lncRNA downstream 209914 20612663 ~ 20614108 (-) True G86689
TU108154 lncRNA downstream 429816 20393044 ~ 20394206 (-) True G86648
TU108144 lncRNA downstream 467543 20355070 ~ 20356479 (-) True G86639
TU108260 lncRNA upstream 962 20828259 ~ 20830922 (-) True G86740
TU108398 lncRNA upstream 348409 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 359471 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 362542 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 464076 21291373 ~ 21293903 (-) True G86881
AMCG00021534 mRNA downstream 99200 20722370 ~ 20724822 (-) False AMCG00021534
AMCG00021533 mRNA downstream 130798 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 185066 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 363744 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 388971 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021538 mRNA upstream 16366 20843663 ~ 20855774 (-) True AMCG00021538
AMCG00021545 mRNA upstream 71774 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 89386 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 156303 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 207566 21034863 ~ 21038425 (-) True AMCG00021548
TU108218 other downstream 99142 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 426239 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 463767 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 488718 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1355289 19466060 ~ 19468733 (-) False AMCG00021495
TU108350 other upstream 236561 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2327890 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2510954 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4576353 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5078147 25905444 ~ 25908005 (-) True G87806

Expression Profile