RNA id: TU108259


Basic Information

Item Value
RNA id TU108259
length 1032
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G86739
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20824022 ~ 20854294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAATTATTGGTGTGTTTCGGAACATCGGACATGCTTTATTTCAGAacttttcacaatttatttaaacatctcacatatacaaaataggtacaataaactttttttaatttttggtgGCTGTTGTCGTAGAGAAAGATTCCTCCGTAAACCCATTCGAATGGACAAAAATGTGCTGAAAGCATGGACACCTGGTTgaagaaaaagggagaaaaaaaaccaaaacaaaacaaaaacaaaacagaggcCTAGGACTGATCCACATGCTTAATACGGGTCATCAGAGAGAACCGCGTGACAATCCATCTTCGGTACAACACAAtgtaatacagtaaaagtgGTTAGGATTTGAGCTGGGTTGTTCAAACGCAGCACCGAGTATAGCACCATTTTCACTGCTTCAAGTATCTAAGCCGTGTAATACTGTTTTTAGCACCTTTTTAACAGGACCGAGATATAAGTTGcctttgttaaaatattaagtaTGTGGATCAGGTTTTAAAACAAGCATGAGGTAGTTCAAACCTTTGGAAGTTGTGGTTTTAAACTTCCTCTTTGGAAGATATACAAAGACCACAAATGGTGCAtactttcattgtttttatttcacttttttattttacaaatgctgACATGTCCCACAACAAGGTGATTCCCACGTCTCTTGGGGGAAAGGGGCGGGGGGAAGGGGCTGTATTAAATTGCATTGCACAAATGCTCCGTTCAGTCCATTGTCTCCTCCGATAGGCCCGAGCTTAAGCAAGTGGATGAGCAGAAGAAATCAGcattcagtataaaaaaaaaacagaaatggcgAGAGagattttttgattttgatttcttttcttttctttctttttgtttaatttatcatGAGTCTACTTATTTGAAACAGACTGGGCCAACGTCCAAACCAATTTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATATCGAGGATGGGGAGACGAGAGGGTTTCGATGTTTTGTATTCGATGACTGTCTTGCCCCACTGGCCGGTGTGTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108256 lncRNA downstream 1666 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 3027 20821632 ~ 20822603 (-) True G86736
TU108199 lncRNA downstream 211522 20612663 ~ 20614108 (-) True G86689
TU108154 lncRNA downstream 431424 20393044 ~ 20394206 (-) True G86648
TU108144 lncRNA downstream 469151 20355070 ~ 20356479 (-) True G86639
TU108398 lncRNA upstream 321412 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 332474 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 335545 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 437079 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 661738 21516032 ~ 21516234 (-) True G86893
AMCG00021534 mRNA downstream 100808 20722370 ~ 20724822 (-) False AMCG00021534
AMCG00021533 mRNA downstream 132406 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 186674 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 365352 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 390579 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021545 mRNA upstream 44777 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 62389 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 129306 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 180569 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021552 mRNA upstream 232581 21086875 ~ 21094522 (-) True AMCG00021552
TU108218 other downstream 100750 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 427847 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 465375 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 490326 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1356897 19466060 ~ 19468733 (-) False AMCG00021495
TU108350 other upstream 209564 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2300893 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2483957 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4549356 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5051150 25905444 ~ 25908005 (-) True G87806

Expression Profile