RNA id: TU108260


Basic Information

Item Value
RNA id TU108260
length 2564
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G86740
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20828259 ~ 20830922 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTAAGTCATCTACACAAGATCCTCTGGCTTCATATTTCTGAAATGAACTTCCTGCGTGCTTTACAGCAACACTACGTCACTCTTCTGGAGTGGTCTGACCAGTTTGACTAGTAAAAGCCACAACTAGCAAGAATTGGCATAATCCCTACCAGGGTGTCAGCAAGCAATTGTTGTGGTTGGTGCCATGAAATAAATGCACCATACAtagtggaaaataataataacagtaattataacaacaacaataatagcgTCCTTGGTCATCGTATTGCCATTGCTGATTGGATTCGGTATTAAAAACAATGGAGATCCAGTTTTAGAGCGGATCAGTGGTCTGCAGCCACACGGCACTAACTAGCTGAACGTTGCTACACACCTGCAACACTACAGTTACAAGACCATCGCGACACCTTTACACTAAACCCATCTGGGCTCGCGTGTTGATGCGATAAACGCAACGAGGGAGCGGAGGCAGCCCAGCGTGCAGGAACAAAGGGCAGCATCACtgccacacacacgcaccagCCTCTCCGTGCAGTGCGCTGCGGGGCTGCTCTGAACGCCTGTGCCGCGTTTGGGCCGCAGTCGCGCGCTGCGAGGTGACAGCTCGCGCCCCGGGGAGCCCCTGCACGGGACCGGCGCGAGGCAGGACAGGACCGCGCCGAGGGAAGGCTGGCTGTCAGCTcaaccgcaccgcaccgcaccgcCCAGCCTTACCTCCATAGTGCCGAGAGAGCGAGTGCAACACGGCTATAGGCCAGGACCGCCATCTTGGCTCCTCCATGACAACACGCAGACAGACGGGACGCAGCGAAGGGGCTGAACCAGGAGCGCACGTCGGGGCTCAGGCGTCCCCCTGCCGGCGGCTCCGGGGCGGGCTGCCCGCTCTGCCCGCTCTGCCCGCTCTGCCCCTCTAGCGCCGCGGCTTCCTCACCCGGCGGAGTGGCGGGGCGGCGGGCGTCTGTCATCGCGGGGTTGTGGTAGCAAAAAGTAGGACGTGTCCGTGTGCGTGTGAAGTTTGCTGCAGCAAATGCGACAGCAACTCAAAGTAATAAAGCAGCATCAATAAAAAAGCATGCCAAGATCAACACGGGCTGTCCTATGCAAGTGGAGTTTGAGTTTCCTGCTTCCTTATCTCTGCGCCAAGGACGTGCTCTGGTTAGGAGTTGTCAGTAGCAAACAGGTTGATCATCGTAAtgaaactgaagtgcagaaCAGGCTCGGCACTGCGGCCCTTCAGTTACTGCTGGactacatttttgtttgacaCTGTAATAGCCGCCAATCACACGCCGTCTTTTGTCTCTTGTACTATGCAAATATGTAATATTCAGGTGGAGACAATGTCACTATGCAGTTCTAGCACTTCTTTACCCATATATATAATCAGTCTAATGACTTTCTACCTCAAACCCACCTTTGTGCAAAAGACCAAGCTGGCTGCTCTGTGTTGATGCCTGTGCCTTAACTACTTCTCCATTTGTTCAGAAGTGGGTTTTAACACTGAGACCAGTTGCCCCATCTATGCCCGCAGGCTGGCCATTTCCATATCACATCAACTATATAAATATCATGAATTACAATAACATAACCAGCCTATGTTTCTCTCAAATCCAAATAATACAGTTACACAATAGCCCGTATCCCTACGAAGGGAAATGATAAACCTACTTCAAATATTGCAATGAAAGCTGAACATGAAAGTACAACAGACTGGTACCctctgttaataataataatattattttcaaaagacaaTAACAATAAGGTGATAACTTGATTGAACTGCACGCAGTTATCATCTTTATCCACAAGATGGCAGCAGAACAACACGGCACAGTCGCTGCGGCAGGTCTGCTCATCCCCACAGTATTGAGAACAGTCAGTTGCCCGTTATAGTTTATTGTCTGAGATGGTACATGTATTGTTCATACAGCGCAGACTCATTAATTTAGTGCACCTGATCTAACTGGCCAAGGAGGGTGAGGTGAGTGATGTGCATGAAGGAATACAgattgtgtgcgtctctgagATGCACCGAGTCTTTGAGATGAGGTTGTGCACGGCCTGGGGTGGGACCTGTTTGTGTAACTGGGTATAACTGCTTAATCTGCTAGGCTGCACTCACTGCTGAACCAAAACCAGGAGGATATGTCACAACAGCACTGGACACCCGAAACAACGTCTTTGTCTTCAGCTCCCAGAGAAGACAGCGAGAAGATGTGCAGAGACTGACAGGTTGTGCGGTGCCTACGGTGCAGCGTGGGGATTGGCTGTGTGGGGGTGTGGTGTTATTTTGTTCTGTGCGGACAGGTGACGCAGTATTGACACCGTGTTAGTCTCTTCTTTAGTAGTATACAAGCCCCCCTCAGGATGTAATGTGGCGGGTGaaggttttgtgttgtttgaggGATGGTactgacccaaaacacacagccaggctGAAgtaaagaaagagaaggaaagggAATAACACACTGAGCTCCCATTCTGCCCCATCTTTACCCCACTGAGATTCTGGAGTTTGATATTTAGGGAAAGTTTGGCAATAAATGATTAACA

Function

GO:

id name namespace
GO:0005527 macrolide binding molecular_function
GO:0005528 FK506 binding molecular_function

KEGG:

id description
ko00230 Purine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108257 lncRNA downstream 962 20824022 ~ 20827297 (-) True G86739
TU108256 lncRNA downstream 4295 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 5656 20821632 ~ 20822603 (-) True G86736
TU108199 lncRNA downstream 214151 20612663 ~ 20614108 (-) True G86689
TU108154 lncRNA downstream 434053 20393044 ~ 20394206 (-) True G86648
TU108398 lncRNA upstream 344784 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 355846 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 358917 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 460451 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 685110 21516032 ~ 21516234 (-) True G86893
AMCG00021534 mRNA downstream 103437 20722370 ~ 20724822 (-) False AMCG00021534
AMCG00021533 mRNA downstream 135035 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 189303 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 367981 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 393208 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021538 mRNA upstream 12741 20843663 ~ 20855774 (-) True AMCG00021538
AMCG00021545 mRNA upstream 68149 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 85761 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 152678 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 203941 21034863 ~ 21038425 (-) True AMCG00021548
TU108218 other downstream 103379 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 430476 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 468004 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 492955 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1359526 19466060 ~ 19468733 (-) False AMCG00021495
TU108350 other upstream 232936 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2324265 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2507329 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4572728 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5074522 25905444 ~ 25908005 (-) True G87806

Expression Profile