RNA id: TU108340


Basic Information

Item Value
RNA id TU108340
length 533
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G86800
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21035102 ~ 21038425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcccatttttaattcttaattttttatttttttttacaaaaaaaagaaaacaaaactgcagtatTGGTCAACAACATGGATGCTTAATATCTTCGGTCTTCAACGTGTGGCAACAGGACACCATTCCCAATCCTGTGAAAGTCTTATATATAAGTTAAGTCTCAGTGGGCAGCTGAAGACTACGAGGTCTCCATTTTGTAGCCGTGTTTTTCTAGTTCAGCTCTGAGCTGGTTCGAGAAGTCGTCCTCTACGTTGTCATCGTCCCAGTTGTCCTCCCACACGTGTGCGTCTTCGTCTTCGTCCAGGCCGGTCCAGTCTTCCGCTGGAAACTCCTCAAACTCGTCGTCCTCCTCTAGTAATCCCAAATCCACCGTCTGCTTCTTCTCGGACATGATTTCTGGCTTCTTTACCTCAGACATCCGAAGCGCTGCTGCTGTTCAGGTCTAGGGGCTGACGGGATACTGGAGGTTATGAGGCGGTCCTCCCGCGCAAGCGCAGATCCGACGGTGACTTGCTCTGGTGGAACTGGG

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005689 U12-type spliceosomal complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108236 lncRNA upstream 123110 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 132247 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 332645 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 414381 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 420737 20612626 ~ 20614365 (+) True G86685
TU108380 lncRNA downstream 133665 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 198676 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 203241 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 203241 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 257106 21295531 ~ 21297780 (+) True G86884
AMCG00021543 mRNA upstream 54477 20957229 ~ 20980625 (+) True AMCG00021543
AMCG00021544 mRNA upstream 94894 20929804 ~ 20940208 (+) True AMCG00021544
AMCG00021539 mRNA upstream 123100 20908817 ~ 20912002 (+) True AMCG00021539
AMCG00021542 mRNA upstream 127316 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021540 mRNA upstream 136654 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021547 mRNA downstream 39520 21077945 ~ 21080685 (+) True AMCG00021547
AMCG00021550 mRNA downstream 60077 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021551 mRNA downstream 120308 21158733 ~ 21165500 (+) True AMCG00021551
AMCG00021555 mRNA downstream 142377 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021556 mRNA downstream 154537 21192962 ~ 21194602 (+) True AMCG00021556
TU108198 other upstream 367175 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 633853 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 633853 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 654678 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1533860 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 59994 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 60167 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 120199 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 191427 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 191427 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile