RNA id: TU108418



Basic Information


Item Value
RNA id TU108418
length 1063
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G86859
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21237101 ~ 21238163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aagtgaggagtccatgttgactcctaggtctttctcatgcattacttaatctagttctatttctATTGATGTTATTAACTGAATAAACGATAACGATGTCCCCCGCAGGGATCACACAGAGTGTCCCGTCTCGGCCTGTAACTGCAAGTGCATGCAGCTGGACACCACGGGCAACCTGCTCCCGTCCGACACGGCCTAGCCCCTGACGCTGGACCCGTCTCCCTCGCGGGCGTCTCTCTTGGCCTCTGTGGACTGGAAGCTCTCGGGGCCGTGTGCCGCCCGGCCAGGCAGTTTGCCGGGTGAGGAGAAGGGTTTTAACGGGCGACGCGGACACCAGCCACGGGTAGGATCGGCTGCATCTCATGACACGAACACGGCGTCGCGTCACTGGAGCTCCGAGAGGCAGCAGcctttagtacagtgaactaaCAGTCATGATgcaaatataactttttttctaattatttgtAATCACAGGAgtcaaaataacttaatttaaaaagaaacacaaggtCTGAGTCGATACACAGCCGGTTTTAAGAGTGTGGGGTGTTGGATTGAGCTGCCGTGTTTGTGTCTCTGCTCATGGCTCAATAACATACTTGAATGTTTGCTGttcttttgcatattttaaatttctaacatgaaactaaaataaatgttgtctaAAAGGCACAATTAACTGACCTGTGTTCATCAGAAATGCCTGTTTAAACACCACAGAGACACAAGAAATTCAAGGCCACGGTTTTAGGAATGCAGTTGTTTTTCCCTAAATTGGCGAATCCAGTGCAGACTGGACATCCTGGCCATCATTGTCCAAACTGGCACCAGatgaatcattttatttacaattttcaCCCTTCTGTGTCAAGTTATTCCTTACTTAATAAACCTCAAAGCCACTTTGTAATTACAGCCTGAGTTCTGTACAGAGGAAGTCTGATCATTTGGATGTCAAAACTACATCTGCTTCCACAAGCAGTCCTGTCTGTAGTCGATATACCGCTGCTTCTTCCTGACACTGCAGACTGAACTGTTcaagttatattaaaaatggtTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108380 lncRNA upstream 61442 21172090 ~ 21175659 (+) True G86833
TU108340 lncRNA upstream 198676 21035102 ~ 21038425 (+) True G86800
TU108236 lncRNA upstream 325109 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 334246 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 534644 20699214 ~ 20702457 (+) True G86695
TU108424 lncRNA downstream 3503 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 3503 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 57368 21295531 ~ 21297780 (+) True G86884
TU108454 lncRNA downstream 277870 21516033 ~ 21516243 (+) True G86892
TU108467 lncRNA downstream 400113 21638276 ~ 21638516 (+) True G86905
AMCG00021561 mRNA upstream 4248 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021556 mRNA upstream 42499 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021555 mRNA upstream 44344 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021551 mRNA upstream 71601 21158733 ~ 21165500 (+) True AMCG00021551
AMCG00021550 mRNA upstream 128102 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021560 mRNA downstream 16736 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021563 mRNA downstream 31040 21269203 ~ 21291092 (+) True AMCG00021563
AMCG00021565 mRNA downstream 122005 21360168 ~ 21361602 (+) True AMCG00021565
AMCG00021566 mRNA downstream 335887 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021567 mRNA downstream 419379 21657542 ~ 21659873 (+) True AMCG00021567
TU108421 other upstream 1021 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 5613 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 5613 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 72069 21158624 ~ 21165032 (+) False AMCG00021551
TU108360 other upstream 127733 21098419 ~ 21109368 (+) True AMCG00021550
TU109135 other downstream 2936346 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 4038613 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4913905 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 7540152 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7822724 29060887 ~ 29065339 (+) True G88276

Expression Profile