RNA id: TU108421



Basic Information


Item Value
RNA id TU108421
length 609
RNA type TUCP
GC content 0.63
exon number 2
gene id G86861
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21235070 ~ 21236080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGAACTTGACTTGACAATGTTTTTGATGCCCGAATAGACGAGCGGCAACCGGTTTCCCGCCGGCTTCTGTTCCAGGTCCTCTGTGTACTAAAGGATATAGTACAGCGTGTACCACAGGGACTTCAGCTGGGGGTCATCTCCACCAGCCAGCAGGTGGTTCCTCCACACCTGCTCCGTGTCGTGGCCATACTTGGACTGTGCCCGGCGCCTCATCTTGGTGGCGATGTCCATGTCCAGCGACCCGGCCTCGCCCTCCTCGGTGCACTCGTACAGGTGCCGGCCGCAGGCCCAGACCAGTGAGGTGCCGGAGCTCCAGGCCAGGCTGATGCGCTCGAACACGGTGAAGTCGGTCATGGCACGGTGCGGCGACACCACCACCATGCGGTTCTGGCTAAAGGGGTGCCAGGCGAAGGAGGCGATGAGGCCGTCGCAGGGCTGCACGCTGCGCTCGATGATGGTGGGCTCCGTCTCGTCCCCGAGCGGCGTGGGCGCATGCTGCATGTCATACAGCCGGATGACGTTGCTGTCCCGGGTCAGCGTGGCCAGCAGGCCAGTGCGGGTCGGGCACCAGGCCACCTTGGTCAGCGGCTTGGGCTGCTCATTCANNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108380 lncRNA upstream 59411 21172090 ~ 21175659 (+) True G86833
TU108340 lncRNA upstream 196645 21035102 ~ 21038425 (+) True G86800
TU108236 lncRNA upstream 323078 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 332215 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 532613 20699214 ~ 20702457 (+) True G86695
TU108418 lncRNA downstream 1021 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 5586 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 5586 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 59451 21295531 ~ 21297780 (+) True G86884
TU108454 lncRNA downstream 279953 21516033 ~ 21516243 (+) True G86892
AMCG00021561 mRNA upstream 2217 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021556 mRNA upstream 40468 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021555 mRNA upstream 42313 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021551 mRNA upstream 69570 21158733 ~ 21165500 (+) True AMCG00021551
AMCG00021550 mRNA upstream 126071 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021560 mRNA downstream 18819 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021563 mRNA downstream 33123 21269203 ~ 21291092 (+) True AMCG00021563
AMCG00021565 mRNA downstream 124088 21360168 ~ 21361602 (+) True AMCG00021565
AMCG00021566 mRNA downstream 337970 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021567 mRNA downstream 421462 21657542 ~ 21659873 (+) True AMCG00021567
TU108414 other upstream 3582 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3582 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 70038 21158624 ~ 21165032 (+) False AMCG00021551
TU108360 other upstream 125702 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other upstream 125702 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 2938429 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 4040696 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4915988 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 7542235 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7824807 29060887 ~ 29065339 (+) True G88276

Expression Profile