RNA id: TU108455



Basic Information


Item Value
RNA id TU108455
length 203
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G86893
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21516032 ~ 21516234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttgacaatataccctaacattgtgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcatgtattaccttgcacttgtccacattgaatttcat

Function


GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108442 lncRNA downstream 222129 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 325100 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 327194 21186768 ~ 21188838 (-) True G86849
TU108398 lncRNA downstream 331714 21175706 ~ 21184318 (-) True G86848
TU108259 lncRNA downstream 661738 20825630 ~ 20854294 (-) False G86739
TU108475 lncRNA upstream 150168 21666402 ~ 21671315 (-) True AMCG00021569
TU108491 lncRNA upstream 268642 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 614572 22130806 ~ 22188140 (-) True G86997
TU108699 lncRNA upstream 1112365 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 1174374 22690608 ~ 22690889 (-) True G87116
AMCG00021564 mRNA downstream 205133 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021558 mRNA downstream 274941 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021559 mRNA downstream 278568 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021562 mRNA downstream 288225 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021557 mRNA downstream 310087 21195595 ~ 21205945 (-) True AMCG00021557
AMCG00021569 mRNA upstream 152694 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021568 mRNA upstream 158057 21674291 ~ 21761907 (-) True AMCG00021568
AMCG00021572 mRNA upstream 319789 21836023 ~ 21855452 (-) True AMCG00021572
AMCG00021577 mRNA upstream 455055 21971289 ~ 21992069 (-) True AMCG00021577
AMCG00021576 mRNA upstream 485445 22001679 ~ 22012233 (-) True AMCG00021576
TU108350 other downstream 432462 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 791152 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 1118249 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 1155777 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 1180728 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1638953 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 1822017 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 3887416 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4389210 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4575020 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile