RNA id: TU108574


Basic Information

Item Value
RNA id TU108574
length 654
lncRNA type read_through
GC content 0.33
exon number 2
gene id G86997
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22130806 ~ 22188140 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCTACTTTTCCTTAAGTATTGCTAATTTaatcttgtgttgttgtttccttCTTTAGGATGCTGAGAAGTGGAACGATGCCGTAGAAAATGCCTCTGTCATTGCTTTGTCTCTCATCAAGGACAGAAACGCGGCCCTCACTGGACAGATGTTTGTCGTATAAAAGCATTAGATGATCTAATATTTAGTGGACTGTTTTACATAGTCTTGGTCATTATATAATGTTGTCTTGAATGTGGATGCCTTATTTTGTTCCTCTATTTAAATCTAACTCTTCAGTACATGAATGTTGAGACTTGGGGTAAAGAGTCAGATAATGGTTCTTCTGTGAAGTAAGTCCAGTCTGAACATTTGCCGAACATTGACTAATTGGAAAAGTTATTATATTTGATacactatatatttatgtatgcaatAATTGATCCAAAAGTGGTTTAAGAGAGAAGCACTATTCTACATGCAGTTTAGAACATCTAATGCACATTTGTCCAAATGACACACACTCCTCACTACCTATATAAGTACAACAAATGAATCACTGTGGAATGGATTAATATGTAATAGAAAAACAGAGGAGAATCAGAAAGCTtgaataaactatatatacacacacatatatatatatatatatatatatatatatatatatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108491 lncRNA downstream 345672 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 459491 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 614572 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 836903 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 939874 21189839 ~ 21190932 (-) True G86850
TU108699 lncRNA upstream 440459 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 502468 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 819254 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 887494 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 901462 23089602 ~ 23091111 (-) True G87203
AMCG00021583 mRNA downstream 16132 22107007 ~ 22114674 (-) True AMCG00021583
AMCG00021579 mRNA downstream 64233 22063544 ~ 22066573 (-) True AMCG00021579
AMCG00021578 mRNA downstream 67267 22034860 ~ 22063539 (-) True AMCG00021578
AMCG00021580 mRNA downstream 104602 22020985 ~ 22026204 (-) True AMCG00021580
AMCG00021576 mRNA downstream 118573 22001679 ~ 22012233 (-) True AMCG00021576
AMCG00021587 mRNA upstream 12962 22201102 ~ 22226742 (-) True AMCG00021587
AMCG00021586 mRNA upstream 40084 22228224 ~ 22231184 (-) True AMCG00021586
AMCG00021589 mRNA upstream 52560 22240700 ~ 22241688 (-) True AMCG00021589
AMCG00021588 mRNA upstream 54089 22242229 ~ 22246802 (-) True AMCG00021588
AMCG00021592 mRNA upstream 115504 22303644 ~ 22306427 (-) True AMCG00021592
TU108350 other downstream 1047236 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1405926 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 1733023 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 1770551 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 1795502 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 967047 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 1150111 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 3215510 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3717304 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3903114 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile