RNA id: TU108853


Basic Information

Item Value
RNA id TU108853
length 1825
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G87215
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23145004 ~ 23191753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTCCCGGTGTGTCTGCGACGGTTTGACATGGGCGAGGTGCTCTGGCTCTTCTTGCGCCGGTACTCGGGCGAGTACGAGCGGCTCCGGGACTTCTTGCGGTGGGAGTGGGAGCGAGAGCGGGACCGTGTGTAGCGCCTGTGTGAGTGCCTCCTGGACCGCGACCTGCGAGACGGCAAACCAGGATGTCTACACTGAGACCAAACACTAGACAAATGAGAACGGAAAACATTTTGTCCTCTTCTGGTCTAGTCAGCAACTAAATCGTACAAAACTGATTCACTACCTGGCCTGTCTGTCAACATGAATGAGGCATTTCATCAGCATTCACAGTATTTTCACTTTTCTCCATGACGGCTTATCTGGGGCACATTTATAGCAGGAATCAACCTTCAAGCACATATGACTGAAGGAAAATCTAAAGCCTTCATCTCCACCCAACTCTACTGTGACCTAAAGGCCAAGCATTTATGCAAGTTACACATTCCAACATTATGACAACCTCTGAGATGATTGCAAATGTGCCAGTCAATCTACACTTCAGAAATGTCCAAATGCACCAACCCAACTCTAATCATAATTCATAGATGTGAATTTTGAGACTGGATGATGGCCAAGGCTTTGGGTTCAATTGCAAATATTTGCTATACTTTTTcagataaaaatacatttagacatACACCTGACAGCCTATACCAATAGCCATACCTTCAAATTTTAACATTTACCTTTCAGGATCTGAGGGTGCAATGATTGccctggggggaaaaaaaagttgagaaacaaaaccaaaaccaaaactaaaCATACACCCACCACATTCAGTAAAATATCTTTTCACCACCAACCAAACCTAGTAGAttgtgaaaacatattttactgcTGCCATGGGCACGACACCGGGCTCATGTAATGACTCACCTGGACTTGGACCGGGAGTGTGAGCGCGACTCGGACCTCTTTGAAGCTCTTGAAGGACTGTGGGATGCAGACCTGCTCTCTGACTTTACTCGAGCGGGGCTGCCACGATCTGATTTCGACTGAGAACGGGATTCCTATTATTACAGGAGtatgttaaaaacatttcataagatctattcttaaaatattcattaaattaaaaaaaaaaaaaaaaaacttcatgtGCTGTAGGAGAAAAGGTTAAGATTCCatcacttcatttattaaaaatcacCCTCTACAGTTTAAAGTGACATTAAAACAATCCCTTGTATTAAACAAATTCCCTATTTACACCTGATCACCATAGTTTTATACTACATTAGCCATGCATTTTAGACTACAAATAGGAGCATACAGACACTTGGAACATAAACCATACATTTACTTAACCTAGGACTCATTCATTCTTCCAGATTCTTTTAATGCTACTTCTCTCAGGCTTTCTACTGTTCTTCATTCTTCGTTTTTccgtttttcattttcatattccGGGTATTCTTCCCCAAATTGAAACCATTTCATTTAAGACTTAACAATGCACGTGCTTCTATCTGACAATTCTTCCGTTCATTTTTTCCCttcaaattttattttctgatcttTAAAAATTTTCATAAGCCTTCTTTTATCTTGGATATTCTTCCACTTTCTTGGATAATACTCTTCAAATCCTTCACGATCAACTCGTCCTCCGAAGTTGGTGTCCTCGATGTCACTCATTGTCTACGAAGGTTATAcgtattaatgtgtttatatataatctaaAGCAGGAAATAATGTGATTTCCAATAAGAGATCTACGCTATTACCACCAATCTCAATGCCCTCCAGAAAATGGCGGCTGTTGCGTTTTCCGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108852 lncRNA upstream 2504 23145004 ~ 23146510 (+) False G87215
TU108800 lncRNA upstream 134183 23007394 ~ 23014831 (+) True G87168
TU108724 lncRNA upstream 437894 22706899 ~ 22711120 (+) False AMCG00021602
TU108698 lncRNA upstream 520128 22628620 ~ 22628886 (+) True G87091
TU108691 lncRNA upstream 560089 22587214 ~ 22588925 (+) True G87086
TU108897 lncRNA downstream 45273 23197621 ~ 23197869 (+) True G87233
TU108961 lncRNA downstream 336733 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA downstream 336959 23489307 ~ 23492092 (+) True G87288
TU108992 lncRNA downstream 521544 23673892 ~ 23678603 (+) True G87313
TU109000 lncRNA downstream 534977 23687325 ~ 23692148 (+) True G87321
AMCG00021618 mRNA upstream 56146 23089532 ~ 23092868 (+) True AMCG00021618
AMCG00021611 mRNA upstream 60109 23083300 ~ 23088905 (+) True AMCG00021611
AMCG00021612 mRNA upstream 68384 23075563 ~ 23080630 (+) True AMCG00021612
AMCG00021613 mRNA upstream 74939 23068860 ~ 23074075 (+) True AMCG00021613
AMCG00021617 mRNA upstream 145246 23000489 ~ 23003768 (+) True AMCG00021617
AMCG00021623 mRNA downstream 4531 23156879 ~ 23166512 (+) True AMCG00021623
AMCG00021624 mRNA downstream 16233 23168581 ~ 23180173 (+) True AMCG00021624
AMCG00021626 mRNA downstream 33924 23186272 ~ 23203415 (+) True AMCG00021626
AMCG00021625 mRNA downstream 61023 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021628 mRNA downstream 191542 23343890 ~ 23369320 (+) True AMCG00021628
TU108421 other upstream 1912934 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1917526 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1917526 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1983982 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2039646 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1022161 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2124428 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2999720 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5625967 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5908539 29060887 ~ 29065339 (+) True G88276

Expression Profile