RNA id: TU108932


Basic Information

Item Value
RNA id TU108932
length 234
RNA type TUCP
GC content 0.52
exon number 1
gene id G87263
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23338251 ~ 23338484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAAATATGCAGGAAGAACTCCGAAGCATTGATATGGAAAACATTAAAGATATCGTGCCGACCATTACCAACAAAATACGCCTTCCCTTCATCCAGAAACTCTCCCACTCTGTCACCAATTTACCGCTCAGGTTTGGCAGAGCCCCTCAGCCTGTTGCCAACCTGCCCCTGAGGTTTGGTAGAGCCATGCCCGAGGGGGTAGTGAGGATGCCCAAGGCTGCCCTGAGTCTGCC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108931 lncRNA downstream 7907 23329325 ~ 23330344 (-) False AMCG00021630
TU108898 lncRNA downstream 140408 23197581 ~ 23197843 (-) True G87234
TU108868 lncRNA downstream 232063 23093588 ~ 23106188 (-) True G87218
TU108838 lncRNA downstream 247140 23089602 ~ 23091111 (-) True G87203
TU108827 lncRNA downstream 262236 23075634 ~ 23076015 (-) True G87193
TU108938 lncRNA upstream 32706 23371190 ~ 23372192 (-) True G87269
TU108952 lncRNA upstream 94732 23433216 ~ 23481900 (-) True G87282
TU108957 lncRNA upstream 144488 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA upstream 144488 23482972 ~ 23488212 (-) False G87287
TU108976 lncRNA upstream 156835 23495319 ~ 23498761 (-) False AMCG00021634
AMCG00021630 mRNA downstream 5283 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021629 mRNA downstream 34505 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021627 mRNA downstream 76071 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021619 mRNA downstream 177260 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021621 mRNA downstream 185930 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021634 mRNA upstream 156541 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021637 mRNA upstream 328109 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021635 mRNA upstream 332941 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021636 mRNA upstream 339347 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021639 mRNA upstream 359160 23697644 ~ 23698829 (-) True AMCG00021639
TU108883 other downstream 177274 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2254681 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2613371 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2940468 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2977996 20358301 ~ 20360255 (-) True G86640
TU109433 other upstream 2065166 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2566960 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2752770 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2813621 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3572990 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile